GgaALTA1034452-4/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000013073 | UPP1
Description
uridine phosphorylase 1 [Source:HGNC Symbol;Acc:HGNC:12576]
Coordinates
chr2:79901982-79904879:+
Coord C1 exon
chr2:79901982-79902046
Coord A exon
chr2:79904762-79904811
Coord C2 exon
chr2:79904812-79904879
Length
50 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CCATGCTGCTGTCCTGACAGAGA
3' ss Score
7.15
Exon sequences
Seq C1 exon
GTCCAAGCATACATGGCTCCTGGTGTCTCGAATGAGAAGAAAACGGAAGATGAACAGTCTTCAAG
Seq A exon
AGAAAATTCTATCCATCTGTGCAACCCTCACCTGGAAAAAATGAAAGAAG
Seq C2 exon
ACATCCTATACCATTTTGCTCTTGGGACCGGTACCCATGATTTTCCTGCACTGTTTGGAGATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013073-6-4,6-3,6-2,6-1-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAAGCATACATGGCTCCT
R:
TTTACATCTCCAAACAGTGCAGGA
Band lengths:
132-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]