MmuALTA0019523-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000020407 | Upp1
Description
uridine phosphorylase 1 [Source:MGI Symbol;Acc:MGI:1097668]
Coordinates
chr11:9125633-9129605:+
Coord C1 exon
chr11:9125633-9125698
Coord A exon
NA
Coord C2 exon
chr11:9129488-9129605
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
TCTCTTTTTGTTTCTAACAGTGA
3' ss Score
10.06
Exon sequences
Seq C1 exon
GTCCTCCTACAGTGAGAACATGGCAGCTACAGGAACTGAAGCAAAGGACCTTGAAAACCATCACAA
Seq A exon
NA
Seq C2 exon
TGACTGCTTCATCCAACTTTCAAATCCAAACATAGCAGCAATGAAGGAAGACGTGCTCTACCATTTCAACCTCAGCACTAGCACACACGATTTCCCTGCTATGTTTGGAGACGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020407-16-14,16-13-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.245 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTACAGTGAGAACATGGC
R:
TCACGTCTCCAAACATAGCAGG
Band lengths:
180-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types