GgaALTA1036482-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003135 | chAnk3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:RefSeq peptide;Acc:NP_001264026]
Coordinates
chr6:8502378-8516397:+
Coord C1 exon
chr6:8502378-8502756
Coord A exon
chr6:8516294-8516296
Coord C2 exon
chr6:8516297-8516397
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
TTTATACCTTTCCTTTAAAGCAG
3' ss Score
7.57
Exon sequences
Seq C1 exon
CTCGGACCAATGTAGGGACTCTGTTACCTCATATGTCAAAGGAGAAGCAGGGAAGCCAGAAACAAATGGAAGCCTCTCAGAAACCACAACAGAAACAAAAACTAAATCCTATGTCCAGGAATCTTTAAATGACGTGGGAAAACACAGTGACAAAGAAGCCCTGAAAACAAAGTCCCAGATTTCAGCTGGTACTGATGAGCAAACGTTATCATCAACAGCATATCAGAAATCTTTGGAAGAGACTAGCAAGCCAACAACAGAAGGCAACAAAACATCTGTGCCCGTCAGTGTGAAGAAGATGGGCTGGAGTACTTCAGAGGATGGCAAGGCAAGAGCAGGCATCCAAGAGGAGGAGGGAGCAGGAATGTCTGAGCAGAAG
Seq A exon
CAG
Seq C2 exon
GGCGAAGCTTACAAGGTTAAGACAAAGAAAGAAGTCAGACACGTGGAGAAGAAAAGTTACTCGTGAAAGCTGAAAGCCAACCACTGACCGGTCAGTTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-91-77,91-76-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.864
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGGAATGTCTGAGCAG
R:
GGTTGGCTTTCAGCTTTCACG
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]