GgaALTA1036647-2/2 @ galGal4
Alternative 3'ss
Gene
NA
Description
NA
Coordinates
chr2:34820423-34823182:+
Coord C1 exon
chr2:34820423-34820564
Coord A exon
chr2:34823082-34823084
Coord C2 exon
chr2:34823085-34823182
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
TTCTATACTGCTGCATGTAGCAG
3' ss Score
2.56
Exon sequences
Seq C1 exon
GGTTGATTTCTTTATTCCTGGCGTATCTGTGATTGGGGGATTCTCAATGTGTTCAAGCCCTGGTCTGCTGGAACGAGAAGGAGTGTTAGAGCTTGCAGTGAAGTACACTGACCATCCTCCTGCTCACTGGATCCACACTGAG
Seq A exon
CAG
Seq C2 exon
ATCTTCATGGATACCAAGAGAGTAAAGGAAACGGATACAAAATGGGAACAGTGAAGCTGTACTACAGTGCAAAAAATACAAGTGAACTCTTATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011239-16-9,16-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCATCCTCCTGCTCACT
R:
CAGCTTCACTGTTCCCATTTTGT
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]