GgaEX0016905 @ galGal4
Exon Skipping
Gene
ENSGALG00000011239 | OXNAD1
Description
oxidoreductase NAD-binding domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001186567]
Coordinates
chr2:34820423-34823182:+
Coord C1 exon
chr2:34820423-34820564
Coord A exon
chr2:34822940-34822976
Coord C2 exon
chr2:34823082-34823182
Length
37 bp
Sequences
Splice sites
3' ss Seq
TATCTTCTTTTCCATCCTAGTGT
3' ss Score
9.08
5' ss Seq
GAGGTGATT
5' ss Score
5.41
Exon sequences
Seq C1 exon
GGTTGATTTCTTTATTCCTGGCGTATCTGTGATTGGGGGATTCTCAATGTGTTCAAGCCCTGGTCTGCTGGAACGAGAAGGAGTGTTAGAGCTTGCAGTGAAGTACACTGACCATCCTCCTGCTCACTGGATCCACACTGAG
Seq A exon
TGTACTCTTGACTCAGAAGTGGCTCTGCGAGTGGGAG
Seq C2 exon
CAGATCTTCATGGATACCAAGAGAGTAAAGGAAACGGATACAAAATGGGAACAGTGAAGCTGTACTACAGTGCAAAAAATACAAGTGAACTCTTATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011239-'16-8,'16-7,17-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0097019=FAD_binding_6=FE(51.6=100)
A:
PF0097019=FAD_binding_6=PD(11.0=76.9)
C2:
PF0017516=NAD_binding_1=PU(31.4=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTGGAACGAGAAGGAGT
R:
TCCGTTTCCTTTACTCTCTTGGT
Band lengths:
117-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]