BtaEX0025593 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004891 | OXNAD1
Description
Bos taurus oxidoreductase NAD-binding domain containing 1 (OXNAD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035090]
Coordinates
chr1:155047946-155157700:+
Coord C1 exon
chr1:155047946-155048087
Coord A exon
chr1:155156587-155156829
Coord C2 exon
chr1:155157592-155157700
Length
243 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTCTGTCCCCCGCAGTGC
3' ss Score
11.51
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
GGTTGACTTTTTTATCCCAGGAGTCTCTGTGGTTGGTGGGTTCTCAATATGCTCCAGCCCTAGGCTGCTGGAACAGGAGAGAATGATAGAACTGGCAGTGAAACATGCAAACCACCCTCCTGCTCTCTGGATCCACAATCAG
Seq A exon
TGCACCCTGGACTCTGAGGTGGCTGTGAGAGTCGGGGGGGAGTTCTTCTTCGACCCGAAGCCCACGGACGCCTCCAGAAACCTAGTGTTGATCGCGGGAGGTGTTGGGATTAACCCCCTGCTTTCCATCCTGCGGCACGCGGCCGACCTCCTCAGAGAGCGGGCAAGCAAGGGACAGGGGTATGAGATGGGGACAGTCAGACTGCTGTACAGCGCGAAAGACACCAGCGAGCTCCTGTTCAAG
Seq C2 exon
AAAAATATCCTCGATCTAGTAAATGAATTTCCTGAGAAGATTGCCTGCAGTTTGCATGTTACAAAACAGACGACACAAATCACTGCAGACCTCAGACCGTACATCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004891-'12-19,'12-16,16-19
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0017516=NAD_binding_1=PU(42.1=63.0)
C2:
PF0017516=NAD_binding_1=FE(29.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTATCCCAGGAGTCTCTGTGGT
R:
ATGTACGGTCTGAGGTCTGCA
Band lengths:
236-479
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development