HsaEX6054652 @ hg38
Exon Skipping
Gene
ENSG00000154814 | OXNAD1
Description
oxidoreductase NAD binding domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25128]
Coordinates
chr3:16294856-16306087:+
Coord C1 exon
chr3:16294856-16294997
Coord A exon
chr3:16301626-16301868
Coord C2 exon
chr3:16303408-16306087
Length
243 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTTTCCTGCCTTAGTGT
3' ss Score
9.47
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GGTTGATTTCTTTATTCCAGGAGTCTCTGTGGTTGGTGGGTTTTCAATATGCTCCAGTCCCAGACTGCTAGAACAAGAGAGAGTGATAGAATTGGCAGTGAAATATACGAACCACCCTCCTGCCCTCTGGGTTCACAATACG
Seq A exon
TGTACACTTGACTGTGAAGTGGCTGTGAGAGTGGGTGGAGAGTTCTTCTTTGACCCTCAGCCTGCGGATGCCTCTAGAAACCTCGTGTTGATTGCAGGAGGAGTCGGAATTAACCCTCTGCTTTCCATCCTGCGGCACGCAGCAGATCTCCTCAGAGAGCAGGCAAACAAAAGAAATGGATATGAGATAGGAACAATAAAACTATTCTACAGTGCAAAAAATACCAGCGAACTCCTGTTTAAG
Seq C2 exon
AAGGAAGAATAACGGAGAAGGAGATAAGAGATCATATTTCAAAAGAGACTTTGTTCTATATTTGTGGCCCACCTCCAATGACAGACTTTTTCTCCAAGCAACTGGAAAACAACCATGTACCCAAAGAACACATTTGCTTTGAGAAGTGGTGGTAGGAGGCAGACAAAGGCAGAAAAAATAAAGAGGTGAGATCTACTCAGGAGAGCTCCTGTCCTTTGTGGCATGATTAATTTTTTTTATCTCTACTTGAGTTGTCTTATTTTTTAAGGCTATAAACTTAGTGACCAGCTGGATAATAAAAGCCAGCTGGCAGACTTAAATGATAAACTTTTTGCAAAGACCTCAGTGATCAAACTATTTTTTACTATACTGATTTTCTGTTATTAACAACGATTTAATTGTCTCATGATGTACCATGATTGGTCAGTATAGATTTTTCTTTTGTCTTTAGGCAAAAAAAAGATATATACTTATGTCTAATCATAGGAAAATGTGATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154814_MULTIEX2-7/8=5-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.039
Domain overlap (PFAM):
C1:
NO
A:
PF0017516=NAD_binding_1=PU(42.1=63.0)
C2:
PF0017516=NAD_binding_1=PD(26.4=61.5)
Main Skipping Isoform:
ENST00000285083fB21785
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGGAGTCTCTGTGGTTGG
R:
TTTGTCTGCCTCCTACCACCA
Band lengths:
294-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains