GgaEX1066345 @ galGal4
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr2:34820423-34825720:+
Coord C1 exon
chr2:34820423-34820564
Coord A exon
chr2:34823082-34823182
Coord C2 exon
chr2:34825605-34825720
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTCTATACTGCTGCATGTAGCAG
3' ss Score
2.56
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGTTGATTTCTTTATTCCTGGCGTATCTGTGATTGGGGGATTCTCAATGTGTTCAAGCCCTGGTCTGCTGGAACGAGAAGGAGTGTTAGAGCTTGCAGTGAAGTACACTGACCATCCTCCTGCTCACTGGATCCACACTGAG
Seq A exon
CAGATCTTCATGGATACCAAGAGAGTAAAGGAAACGGATACAAAATGGGAACAGTGAAGCTGTACTACAGTGCAAAAAATACAAGTGAACTCTTATTTAAG
Seq C2 exon
ATTACAGAAAAATATTCTTGGTTTGATGAGTGCATTTCCTGGAAAGATCACATGTCGTTTCCACGTTACCCAGCAGAGCTCACCCATCTGTGAAGAACTTCAGCCCCACGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011239_MULTIEX2-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGCGTATCTGTGATTGGG
R:
CTGTGACGTGGGGCTGAAGTT
Band lengths:
242-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]