MmuEX0033350 @ mm9
Exon Skipping
Gene
ENSMUSG00000021906 | Oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:MGI Symbol;Acc:MGI:1916953]
Coordinates
chr14:32909673-32914280:+
Coord C1 exon
chr14:32909673-32909814
Coord A exon
chr14:32912575-32912817
Coord C2 exon
chr14:32914172-32914280
Length
243 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTTTCTTACTTCAGTGC
3' ss Score
9.03
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GGTTGATTTCTTCATCCCAGGAGTCTCAGTGGTTGGTGGGTTTTCAATTTGCTCCAGTCCCCAACGGCTAGAACGAGACAGAATAATAGAACTGGCGGTGAAATATGCAGACCACCCTCCTGCTGTCTGGGTTCACAATAAG
Seq A exon
TGCACACTTGACTCTGAAGTGGCTCTCAGAGTAGGTGGAGAGTTCTTCTTTGACCCTCAGCCCACAGATGCCCCTCGAAACCTCATCTTGATTGCTGGAGGGGTCGGAATTAACCCCCTGCTTTCTATCCTGCGCCACTCGGCAGATCTCCACCGGGACCACGCAGACAAAGGACGTAGCTATGAGATAGGGACAGTAAAACTGTTCTACAGTGCAAAGAACACCAGCGAGCTCCTGTTTAAG
Seq C2 exon
AAAGATATCCTCGACTTAGTACATGAATTCCCTGAGAAGATTTCTTGCAGTTTTCATGTTACAAAACAGACAGCACAAATCAGTGCGGAATTGAAGCCTTATGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021906-'12-21,'12-16,15-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
PF0097019=FAD_binding_6=PD(53.5=80.9)
A:
PF0017516=NAD_binding_1=PU(42.1=63.0)
C2:
PF0017516=NAD_binding_1=FE(29.8=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGATTTCTTCATCCCAGGAGT
R:
ACATAAGGCTTCAATTCCGCACT
Band lengths:
246-489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: