GgaEX0016905 @ galGal3
Exon Skipping
Gene
ENSGALG00000011239 | OXNAD1
Description
NA
Coordinates
chr2:34264495-34269792:+
Coord C1 exon
chr2:34264495-34264636
Coord A exon
chr2:34267012-34267254
Coord C2 exon
chr2:34269684-34269792
Length
243 bp
Sequences
Splice sites
3' ss Seq
TATCTTCTTTTCCATCCTAGTGT
3' ss Score
9.08
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGTTGATTTCTTTATTCCTGGCGTATCTGTGATTGGGGGATTCTCAATGTGTTCAAGCCCTGGTCTGCTGGAACGAGAAGGAGTGTTAGAGCTTGCAGTGAAGTACACTGACCATCCTCCTGCTCACTGGATCCACACTGAG
Seq A exon
TGTACTCTTGACTCAGAAGTGGCTCTGCGAGTGGGAGGTGATTTCTTCTTTGATCCTCAGCCTGGTGACACCCCTGTAAAACTAGTGCTAATAGCAGGGGGTGTTGGAATTAACCCCTTGTTTTCTATACTGCTGCATGTAGCAGATCTTCATGGATACCAAGAGAGTAAAGGAAACGGATACAAAATGGGAACAGTGAAGCTGTACTACAGTGCAAAAAATACAAGTGAACTCTTATTTAAG
Seq C2 exon
AAAAATATTCTTGGTTTGATGAGTGCATTTCCTGGAAAGATCACATGTCGTTTCCACGTTACCCAGCAGAGCTCACCCATCTGTGAAGAACTTCAGCCCCACGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011239-'8-8,'8-4,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0097019=FAD_binding_6=FE(51.1=100)
A:
PF0097019=FAD_binding_6=PD(12.0=13.6),PF0017516=NAD_binding_1=PU(42.1=63.0)
C2:
PF0017516=NAD_binding_1=FE(29.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGATTTCTTTATTCCTGGCGT
R:
GACGTGGGGCTGAAGTTCTTC
Band lengths:
247-490
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]