HsaEX6054652 @ hg19
Exon Skipping
Gene
ENSG00000154814 | OXNAD1
Description
oxidoreductase NAD-binding domain containing 1 [Source:HGNC Symbol;Acc:25128]
Coordinates
chr3:16336363-16344255:+
Coord C1 exon
chr3:16336363-16336504
Coord A exon
chr3:16343133-16343375
Coord C2 exon
chr3:16344147-16344255
Length
243 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTTTCCTGCCTTAGTGT
3' ss Score
9.47
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GGTTGATTTCTTTATTCCAGGAGTCTCTGTGGTTGGTGGGTTTTCAATATGCTCCAGTCCCAGACTGCTAGAACAAGAGAGAGTGATAGAATTGGCAGTGAAATATACGAACCACCCTCCTGCCCTCTGGGTTCACAATACG
Seq A exon
TGTACACTTGACTGTGAAGTGGCTGTGAGAGTGGGTGGAGAGTTCTTCTTTGACCCTCAGCCTGCGGATGCCTCTAGAAACCTCGTGTTGATTGCAGGAGGAGTCGGAATTAACCCTCTGCTTTCCATCCTGCGGCACGCAGCAGATCTCCTCAGAGAGCAGGCAAACAAAAGAAATGGATATGAGATAGGAACAATAAAACTATTCTACAGTGCAAAAAATACCAGCGAACTCCTGTTTAAG
Seq C2 exon
AAAAATATCCTTGATTTAGTAAATGAATTTCCTGAGAAGATTGCATGCAGTTTGCATGTTACAAAACAGACTACACAAATCAATGCGGAACTCAAGCCATACATCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154814-'10-14,'10-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0097019=FAD_binding_6=FE(52.8=100)
A:
PF0017516=NAD_binding_1=PU(42.1=63.0)
C2:
PF0017516=NAD_binding_1=FE(29.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTTATTCCAGGAGTCTCTGTGG
R:
CCGTGATGTATGGCTTGAGTTCC
Band lengths:
244-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)