GgaALTD0000683-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000002056 | C15H22ORF25
Description
chromosome 15 open reading frame, human C22orf25 [Source:RefSeq peptide;Acc:NP_001007837]
Coordinates
chr15:1253709-1258398:+
Coord C1 exon
chr15:1253709-1253809
Coord A exon
NA
Coord C2 exon
chr15:1258281-1258398
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTACCC
5' ss Score
4.28
3' ss Seq
GATCTGCATTTCCTTTGTAGGCT
3' ss Score
9.19
Exon sequences
Seq C1 exon
CCGCCCCGCGCATTCCCCCGGGACCGCGGGCCTCGCCGCCTCCTCACCCGGCGCGGCGGCACGGGGTCGGCCTCCCCCCCTCCTGTTCCTGCCTACAAAGG
Seq A exon
NA
Seq C2 exon
GCTGTTACAGGATGACCTTGTGCTGAGCTTTTGTAGAAAAAACGAGACTTAATCATTCTTCAATGTGCATCATTCTGTTCAAATTTGATCCACGGCCGGTTTCAAAAAATGCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002056-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF057427=NRDE=PU(30.5=94.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCTGTTCCTGCCTACAA
R:
TTTTTGAAACCGGCCGTGGAT
Band lengths:
132-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]