GgaEX0027492 @ galGal4
Exon Skipping
Gene
ENSGALG00000002040 | ARVCF
Description
armadillo repeat gene deleted in velocardiofacial syndrome [Source:RefSeq peptide;Acc:NP_989796]
Coordinates
chr15:1237518-1254330:-
Coord C1 exon
chr15:1253876-1254330
Coord A exon
chr15:1253516-1253574
Coord C2 exon
chr15:1237518-1237586
Length
59 bp
Sequences
Splice sites
3' ss Seq
CTCCCGGCCACACCGCGAAGTCG
3' ss Score
-1.04
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
AGCGGCCAATAGGAAAATTCGCGGCTGCTGGCGGCGCGCGCCGGTTCGCGCGGCGGCTGTGGAGAGTCAGCGCGAGGCCGGGCCGGCGGCGGTAGTTCGAGCGCGGGGCCGCCCCCTCAGAGCCGCCCCCTCAGAGCCGCGCACGTCGCCGCACCGCGTGTGGGGCGGGCGGGGGTGCCGCTTTCTCTCCCCCCCTTCTGCGTGAACGCTGCGGAATGATAATGCCCCGATTAAAGGAATAAAGAGTTGAGGGACGGCAGCGGCGCGGCCCGGGGCCCGCGTGAGGGGCCGCGGCCGGAGGCGCTCCGCAGGCGGTCGCTTATTTTCAATGCGGCTTCGGAAGGGCGCGCGTCTGTCAGCGCCGCCCTCGGAGCTGCGCGCGGAGCGGCCCCGGCGGCAGCGAGCTGCAGAAACGCCCCGCGCCGCAAACGTCAGCCAAAATACTCACGGCAGAG
Seq A exon
TCGGCGGCAGCCAGGAAAACCAGCCGAGGGCAGAGAAGCGGGAGAAGGCGGAGGAGATG
Seq C2 exon
AAATATCCGTAACTTTGATTTCTGCTTTATGAACAAGGGAAGGGACCTAACAACTCACTGAAAAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGCTGCAGAAACGCC
R:
ACTCTTTTCAGTGAGTTGTTAGGTCC
Band lengths:
124-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]