GgaALTD0001466-2/4 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000027698 | COX19
Description
cytochrome c oxidase assembly protein COX19 [Source:RefSeq peptide;Acc:NP_001243736]
Coordinates
chr14:2234035-2235785:-
Coord C1 exon
chr14:2235684-2235785
Coord A exon
chr14:2235680-2235683
Coord C2 exon
chr14:2234035-2235333
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGCG
5' ss Score
2.99
3' ss Seq
TTCTGTTGTTTCCGACGTAGGCA
3' ss Score
7.82
Exon sequences
Seq C1 exon
CGCCTTCAAGGAGCGCTTCATGCAGTGCCTCCGCGACAGCGGCTTCGAGAGCGGCGCGTGCCGGGAGCGCGCCATGGCCTACCTGCAGTGCCGCATGGACAG
Seq A exon
GCAG
Seq C2 exon
GCAGCTCATGGCTAACGAACCTCTGGAAAAGCTGGGATTTAAAGACCTGATGGATGAGAAGTCGGAAGCAGAACCTGGGAAGCTGTGATGAGGAAAGACGGCTGTACCCCTCCCAGCCGTACCTCACCGCTCACATGCAGGAGGCGTAACTCCTGTGGAGTGCACGTTGTATTCGTATTGCGATAGGAAGCGCTTTGTGAAGGAGCCTTTTCTTCCAAAATGTTCTTTCCTAAAATAAGACTGTTAAAGTGAACCAAAGCACTGCCTTTGTTTGCTTTCCTGGGGTGTTTCTTAGCTTCTTTCCTTTAGATTCTCCAGCCTGCTCTTAAGGGTCGCTGGTACTGCTTCACCTGGCAGAAAGCAGTGGTTGCCTGAAGTGCTCTCCGTGTCTGCGGGGGCAGTAAACTCTTGCTTTAAAAAAGCAACAACAACGCAGCAGCCCTCCACCTCTGTTGTACACCTGGTGAACAATAGGCTACTGTTACGTGGGCATTACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027698-2-3,3-3,4-3,5-3-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.414
Domain overlap (PFAM):
C1:
PF067478=CHCH=WD(100=92.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCCTACCTGCAGTGC
R:
CCAGGTTCTGCTTCCGACTTC
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]