GgaEX0005104 @ galGal4
Exon Skipping
Gene
ENSGALG00000027698 | COX19
Description
cytochrome c oxidase assembly protein COX19 [Source:RefSeq peptide;Acc:NP_001243736]
Coordinates
chr14:2234035-2236026:-
Coord C1 exon
chr14:2235896-2236026
Coord A exon
chr14:2235684-2235795
Coord C2 exon
chr14:2234035-2235333
Length
112 bp
Sequences
Splice sites
3' ss Seq
GCCCTCGCTGTGTGTTGCAGGGG
3' ss Score
9.35
5' ss Seq
CAGGCAGGT
5' ss Score
2.53
Exon sequences
Seq C1 exon
CTACGCGTTCGGCGCTCTCGCGAGAGCGGCGGGGCCCGGTGCTGCAGCCATGTCTACCGCTATGAACTTCAGCGCCAAGAGCTTCAAGCCGCGGCCGCCGGACAAGGGCGCCTTCCCGCTGGATCACTTCG
Seq A exon
GGGAGTGCAGCGCCTTCAAGGAGCGCTTCATGCAGTGCCTCCGCGACAGCGGCTTCGAGAGCGGCGCGTGCCGGGAGCGCGCCATGGCCTACCTGCAGTGCCGCATGGACAG
Seq C2 exon
GCAGCTCATGGCTAACGAACCTCTGGAAAAGCTGGGATTTAAAGACCTGATGGATGAGAAGTCGGAAGCAGAACCTGGGAAGCTGTGATGAGGAAAGACGGCTGTACCCCTCCCAGCCGTACCTCACCGCTCACATGCAGGAGGCGTAACTCCTGTGGAGTGCACGTTGTATTCGTATTGCGATAGGAAGCGCTTTGTGAAGGAGCCTTTTCTTCCAAAATGTTCTTTCCTAAAATAAGACTGTTAAAGTGAACCAAAGCACTGCCTTTGTTTGCTTTCCTGGGGTGTTTCTTAGCTTCTTTCCTTTAGATTCTCCAGCCTGCTCTTAAGGGTCGCTGGTACTGCTTCACCTGGCAGAAAGCAGTGGTTGCCTGAAGTGCTCTCCGTGTCTGCGGGGGCAGTAAACTCTTGCTTTAAAAAAGCAACAACAACGCAGCAGCCCTCCACCTCTGTTGTACACCTGGTGAACAATAGGCTACTGTTACGTGGGCATTACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027698-'0-3,'0-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.000 C2=0.414
Domain overlap (PFAM):
C1:
NO
A:
PF067478=CHCH=WD(100=92.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCGCTATGAACTTCAGCGC
R:
ATACAACGTGCACTCCACAGG
Band lengths:
249-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]