DreEX6094278 @ danRer10
Exon Skipping
Gene
ENSDARG00000063882 | cox19
Description
COX19 cytochrome c oxidase assembly factor [Source:ZFIN;Acc:ZDB-GENE-070410-29]
Coordinates
chr24:12601083-12602822:-
Coord C1 exon
chr24:12602635-12602822
Coord A exon
chr24:12602439-12602550
Coord C2 exon
chr24:12601083-12602350
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCATATTTTTGTGTGCGCAGGTG
3' ss Score
9.85
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACTAAAACGCTGACTACCAACCGCCGTTTCTTCGCCGCTGAAGAAAGTGTATTGAAGTGGTATCTTTTTCCAAATAATTAACAGAAAGACTGTATTTTATAAAACAATGTCAACAGCGATGAACTTTGGAAGCAAGACGTTCCGACCGCGTCCACCGGACAAAGGAGCGTTTCCCTTGGATCACTTCG
Seq A exon
GTGAATGTAAATCATTCAAAGAGGTATATATGCAGTGCCTAAGAAACAATCATTTTGACAACTCGCGATGTCGGATAGAATCAAAGGAGTATCTGGAGTGCAGAATGGACAG
Seq C2 exon
ACAGTTAATGACAAAGGAACCTCTTGAAAAACTTGGCTTTAATGATTTGACGGAGGATCTGTCAGAAGAAAATGAAGCCAGATCCTGACAAAGTGCTCTTTTAGTTTATCTGGCCATGTGATATGAATAGCGTGTAACGTTATACTATTAGCCAGAGCCCATGCTTGGTGCTCGGATTGATACTTTACATATTTGAAGTTGTTGTAGAATCCATTAAAAGGTAATTATTTGAAATCCAGTCTTCTTGGACAGTAATGTTATGAACAGAGTTGAACTTCAAAATAATGTCTGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATTATATATATAAATTAAAACTTTAAATTTGAAATGATTTGTTATACATTTCATTTGGCTCTCATTTCATTGCAATCTCACCAAATAACTGATCTCACAAACCAGCTTAAATGTGCATATATCAGCAAACATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063882-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.000 C2=0.552
Domain overlap (PFAM):
C1:
PF084755=Baculo_VP91_N=PU(18.8=53.6)
A:
PF084755=Baculo_VP91_N=FE(46.2=100),PF067478=CHCH=WD(100=92.1)
C2:
PF084755=Baculo_VP91_N=PD(33.8=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCGCCGCTGAAGAAAGTG
R:
GCACTTTGTCAGGATCTGGCT
Band lengths:
256-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]