HsaEX6006786 @ hg19
Exon Skipping
Gene
ENSG00000240230 | COX19
Description
COX19 cytochrome c oxidase assembly homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28074]
Coordinates
chr7:975011-1015185:-
Coord C1 exon
chr7:1015064-1015185
Coord A exon
chr7:1012817-1012928
Coord C2 exon
chr7:975011-975141
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCTTTCTCGTTCTAGGTG
3' ss Score
13.37
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTACGCTCGCAAGGCGCTCGCAGACTCCGGAGTCGCCAACATGTCGACCGCCATGAATTTCGGGACCAAGAGCTTCCAGCCGCGGCCCCCGGACAAGGGCAGCTTCCCGCTGGATCACTTAG
Seq A exon
GTGAATGTAAAAGCTTTAAAGAGAAATTCATGAAGTGTCTTCATAACAATAATTTTGAAAATGCTTTGTGCAGAAAGGAATCAAAAGAATATTTAGAATGCAGGATGGAGAG
Seq C2 exon
ATCCCGACTGGGCCTCCTACACTCTGGGCGTCTTCATCTGCCTGAGCTGCTCGGGAATCCACCGGAATATCCCCCAGGTCAGCAAGGTGAAGTCCGTCCGCCTGGACGCCTGGGAGGAGGCCCAAGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000240230-'0-3,'0-1,2-3=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.759 A=0.000 C2=0.778
Domain overlap (PFAM):
C1:
NO
A:
PF067478=CHCH=WD(100=92.1)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCGCTCGCAGACTC
R:
CTCCACTTGGGCCTCCTCC
Band lengths:
244-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)