MmuEX0012503 @ mm10
Exon Skipping
Gene
ENSMUSG00000045438 | Cox19
Description
cytochrome c oxidase assembly protein 19 [Source:MGI Symbol;Acc:MGI:1915283]
Coordinates
chr5:139336189-139345233:-
Coord C1 exon
chr5:139345072-139345233
Coord A exon
chr5:139342563-139342674
Coord C2 exon
chr5:139336189-139338375
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGGCTTTCTTCTTTCCCTAGGTG
3' ss Score
12.44
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCTCGACGCTTCCTGGACCCGCTCGGTGTTCAGCCATCTGCCCTGCGTCGCCGTCGCTCTCCGCTCTGGATTTCGCCGTGATGTCGACCGCAATGAACTTCGGGACCAAAAGCTTCCAGCCGCGGCCCCCAGACAAAGGCAGCTTCCCGCTGGACCACTTCG
Seq A exon
GTGAATGTAAAAGCTTTAAAGAAAAATTCATGAGGTGTCTCCGTGACAAGAACTATGAAAATGCTTTGTGCAGAAATGAATCTAAAGAGTATTTAATGTGCAGGATGCAAAG
Seq C2 exon
GCAGCTGATGGCACCGGAGCCGCTAGAGAAGCTCGGCTTTAGAGACCTAATGGAAGGGAAGCCAGAGGCAAAGGATGAATGTTGAGAAGGGAGCCACAGGACCTTGTCCCCAGCCTGGAGCAGAGCTGAGCCCTTCTGCCCACAGTGCAGGGGGACCTGACACTCAGCCCGTGCTGCCCCGTGCAGGGGCTCTCCCTGGGGACTTTAGAACATGGCTCACCCCTGCAGCACACACCGAAATGTTTCCTCTGTTGACCTCGGTTCCCCTCTAGAGAGTGTGTTTTTCTTCCGTCTGTGTGTCACAGGACCCGTCAGGACTGAACCCTGCTGTGATTTGATATCCCGCCCAGAGTGGCTGTCACACCACAGAGCCCTGGCCAGCATTCCACAGCGACTCAGCCTGTCACAGATCTGAGTCCTCACACTGGAACCTGTCAATGAAACCAAGCGACAGGAAAATGTCCGCCTTTTGTGCTCACAGACTCATATCAGCTGGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045438_MULTIEX1-3/6=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=0.039 C2=0.268
Domain overlap (PFAM):
C1:
NO
A:
PF067478=CHCH=WD(100=92.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGACAAAGGCAGCTTCCC
R:
TCTAAAGTCCCCAGGGAGAGC
Band lengths:
243-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types