RnoEX0023924 @ rn6
Exon Skipping
Gene
ENSRNOG00000050052 | Cox19
Description
COX19 cytochrome c oxidase assembly factor [Source:RGD Symbol;Acc:1305631]
Coordinates
chr12:17395624-17405103:+
Coord C1 exon
chr12:17395624-17395733
Coord A exon
chr12:17398244-17398355
Coord C2 exon
chr12:17402678-17405103
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTTTCTTTTTCTAGGTG
3' ss Score
13.02
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCCGCTCTCCGCTCTTGATTTCGCCGTGATGTCGACCGCAATGAACTTCGGGACCAAAAGCTTCCAGCCGCGGCCCCCAGACAAAGGCAGCTTCCCGCTAGACCACTTCG
Seq A exon
GTGAGTGTAAAAGCTTTAAGGAAAAATTCATGAAGTGTCTCCGCGACAAGAACTATGAAAATGCTCTGTGCAGAAATGAATCTAAAGAGTATTTAATGTGCAGGATGCAAAG
Seq C2 exon
GCAGCTGATGGCACCAGAACCACTAGAGAAACTCGGCTTTAGAGACATAATGGAGGAGAAACCGGAGGCAAAGGACAAATGTTGAGAATCACTGGGCTGTGTCCCCCTACCTGGAGCAGAGCTGAGCCCTTCTGCCCACCGTGGAGAGAGCTGAGCCATCCTGTGCTGCCCAGAGGAGGGGCTCTCCGTGTTGACTTTGGCTCATCCCTGCAGCATAGACCAGACTGCTTCCTCTACTGACCACACTTCTGCTTCAGAGAGTGGTTTTCTCCTGTCTGTGTGTGTCACAGGATCTGCTCAGGGCTGAACACTGATGTGATATGATATCCCACCTAGTGTGGCCGTCACACCAGAGGCCCTGGACAGCATTCCACAGTGACTCAACCTGAGTCCTCACACCGGAACCTGTCAGCGAAACCAAGCGACAGCAAAATGTCTGCCTTTTGTGCTCACAGACGCACATCATCTTGCTTCCCCTTCTCTTGTGTTCTTTGCTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050052_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.607 A=0.000 C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
PF067478=CHCH=WD(100=92.1)
C2:
NO
Main Skipping Isoform:
ENSRNOT00000072509fB3483
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCGACCGCAATGAACTTCG
R:
ACAGGATGGCTCAGCTCTCTC
Band lengths:
245-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]