BtaEX6111346 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015253 | COX19
Description
Bos taurus COX19 cytochrome c oxidase assembly homolog (S. cerevisiae) (COX19), mRNA. [Source:RefSeq mRNA;Acc:NM_001109966]
Coordinates
chr25:42316375-42321964:+
Coord C1 exon
chr25:42316375-42316475
Coord A exon
chr25:42317046-42317157
Coord C2 exon
chr25:42319541-42321964
Length
112 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCTGTTTCGTTCCAGGTG
3' ss Score
13.08
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GAGTCTGGGTGCCGCCATCATGTCGACAGCTATGAACTTCGGGTCCAAGAGTTTCCAGCCGCGTCCCCCGGACAAGGGCAGCTTCCCGCTCGATCACTTCG
Seq A exon
GTGAATGTAAAAGCTTTAAAGAGAAATTCATGAAGTGTCTCCGGGACAATAATTTTGAAAATGCTTTGTGCAGAAATGAATCAAAAGAGTATCTGGAGTGCAGGATGGAAAG
Seq C2 exon
GCAACTGATGGCACAGGAACCCCTGGAAAAGCTGGGATTTGGAGATTTGATTGATGGGAAGTCAGACAAAAACTGAGCTGTGCCAGGGGGAAGCCCGCAGCTGTGTGGGGTCGTCCGGACTCCTGCCGCCCCAGCAGCGTGTTCATAGGTACCGTGGCTCAGAAGGGGACTGTGGGGGTGCCCGCGAGATGCCGCTCGGAACCACGCCAGACGCCCCTCCCTGGTGGATGTGCCTTGAGGCTAGGAAATGGGTCGTCTTCTGAAGCTCCCGAAAGGATTTTGGAAAAGCGGTGTCCCTTTTGGATCCCTGTTTCCCTCAGGCTTGTGAAGGTTTATCCTAAGTTCGCGTGGGTGGCAGGGCCCCCGGGGAGGTGAGGTGCCAGGTGGCGTCTGCCCACCGAGAGGGCACTGTGGGCGCCAGTGAGCTGCTGGGTTCACGTCACAGGCTGTGTGTGTCCTTTCTGTGCTGGTAGCGTTCAGCCCAGCTCATTACGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015253-'0-3,'0-0,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.464 A=0.026 C2=0.080
Domain overlap (PFAM):
C1:
NO
A:
PF067478=CHCH=WD(100=92.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCATCATGTCGACAGCTAT
R:
CCTTCTGAGCCACGGTACCTA
Band lengths:
255-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]