HsaEX6006786 @ hg38
Exon Skipping
Gene
ENSG00000240230 | COX19
Description
COX19, cytochrome c oxidase assembly factor [Source:HGNC Symbol;Acc:HGNC:28074]
Coordinates
chr7:966075-975549:-
Coord C1 exon
chr7:975428-975549
Coord A exon
chr7:973181-973292
Coord C2 exon
chr7:966075-969456
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCTTTCTCGTTCTAGGTG
3' ss Score
13.37
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTACGCTCGCAAGGCGCTCGCAGACTCCGGAGTCGCCAACATGTCGACCGCCATGAATTTCGGGACCAAGAGCTTCCAGCCGCGGCCCCCGGACAAGGGCAGCTTCCCGCTGGATCACTTAG
Seq A exon
GTGAATGTAAAAGCTTTAAAGAGAAATTCATGAAGTGTCTTCATAACAATAATTTTGAAAATGCTTTGTGCAGAAAGGAATCAAAAGAATATTTAGAATGCAGGATGGAGAG
Seq C2 exon
AAAATTGATGCTACAAGAACCATTGGAGAAACTGGGATTTGGAGACTTGACTAGTGGAAAATCAGAGGCAAAAAAATGAATTTTGATGAGAAGACCCCTGGGCCGTGTTCAGTGGTCTCTCAGGACGGAGGGCATCATCCTGCCTCTTAGGTTGGCTGAGGCCTGCGTGTGGTGTCCTTAGAAATGGGCTTCGAATAGAAGCTCCAGCCCTGTGGGGGCGTCTCCTGGGTAGGGAGTGGCGTCCCGTTTTCCCTTAGGAGGGTGTTTCTGCATTGAACCCCTGAGTGGGACGGCGTTCCCGGCAAAGCTGGGAGGGAGGCGAGCGTGGGGCAAGACCCTTGTCTTCGAGGCCGGGGCCCTCTTGTATGGGGCGGTTTTATGTTGCAGTCCTCTGATACTTTCTGAGTTCAAAGAGGTAAATGTATAAATTTCAGTCCCTTCTGAACACAGATATCATCAGAAAATTACCATTCCCTAGCAGGATGTTTTCGTGTTTGTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000240230-'0-10,'0-5,3-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.759 A=0.000 C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
PF067478=CHCH=WD(100=92.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATGTCGACCGCCATGAAT
R:
AGCCAACCTAAGAGGCAGGAT
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains