MmuEX0012503 @ mm9
Exon Skipping
Gene
ENSMUSG00000045438 | Cox19
Description
COX19 cytochrome c oxidase assembly homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1915283]
Coordinates
chr5:139812143-139821187:-
Coord C1 exon
chr5:139821026-139821187
Coord A exon
chr5:139818517-139818628
Coord C2 exon
chr5:139812143-139814329
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGGCTTTCTTCTTTCCCTAGGTG
3' ss Score
12.44
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCTCGACGCTTCCTGGACCCGCTCGGTGTTCAGCCATCTGCCCTGCGTCGCCGTCGCTCTCCGCTCTGGATTTCGCCGTGATGTCGACCGCAATGAACTTCGGGACCAAAAGCTTCCAGCCGCGGCCCCCAGACAAAGGCAGCTTCCCGCTGGACCACTTCG
Seq A exon
GTGAATGTAAAAGCTTTAAAGAAAAATTCATGAGGTGTCTCCGTGACAAGAACTATGAAAATGCTTTGTGCAGAAATGAATCTAAAGAGTATTTAATGTGCAGGATGCAAAG
Seq C2 exon
GCAGCTGATGGCACCGGAGCCGCTAGAGAAGCTCGGCTTTAGAGACCTAATGGAAGGGAAGCCAGAGGCAAAGGATGAATGTTGAGAAGGGAGCCACAGGACCTTGTCCCCAGCCTGGAGCAGAGCTGAGCCCTTCTGCCCACAGTGCAGGGGGACCTGACACTCAGCCCGTGCTGCCCCGTGCAGGGGCTCTCCCTGGGGACTTTAGAACATGGCTCACCCCTGCAGCACACACCGAAATGTTTCCTCTGTTGACCTCGGTTCCCCTCTAGAGAGTGTGTTTTTCTTCCGTCTGTGTGTCACAGGACCCGTCAGGACTGAACCCTGCTGTGATTTGATATCCCGCCCAGAGTGGCTGTCACACCACAGAGCCCTGGCCAGCATTCCACAGCGACTCAGCCTGTCACAGATCTGAGTCCTCACACTGGAACCTGTCAATGAAACCAAGCGACAGGAAAATGTCCGCCTTTTGTGCTCACAGACTCATATCAGCTGGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045438-'0-8,'0-2,2-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.473 A=0.026 C2=0.321
Domain overlap (PFAM):
C1:
NO
A:
PF067478=CHCH=WD(100=92.1)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGACAAAGGCAGCTTCCC
R:
TCTAAAGTCCCCAGGGAGAGC
Band lengths:
243-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: