GgaEX0005104 @ galGal3
Exon Skipping
Gene
ENSGALG00000003822 | COX19
Description
NA
Coordinates
chr14:2241846-2242590:-
Coord C1 exon
chr14:2242509-2242590
Coord A exon
chr14:2242297-2242408
Coord C2 exon
chr14:2241846-2241946
Length
112 bp
Sequences
Splice sites
3' ss Seq
GCCCTCGCTGTGTGTTGCAGGGG
3' ss Score
9.35
5' ss Seq
CAGGCAGGT
5' ss Score
2.53
Exon sequences
Seq C1 exon
ATGTCTACCGCTATGAACTTCAGCGCCAAGAGCTTCAAGCCGCGGCCGCCGGACAAGGGCGCCTTCCCGCTGGATCACTTCG
Seq A exon
GGGAGTGCAGCGCCTTCAAGGAGCGCTTCATGCAGTGCCTCCGCGACAGCGGCTTCGAGAGCGGCGCGTGCCGGGAGCGCGCCATGGCCTACCTGCAGTGCCGCATGGACAG
Seq C2 exon
GCAGCTCATGGCTAACGAACCTCTGGAAAAGCTGGGATTTAAAGACCTGATGGATGAGAAGTCGGAAGCAGAACCTGGGAAGCTGTGATGAGGAAAGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003822-'0-2,'0-1,2-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF050518=COX17=PU(16.0=14.3)
A:
PF050518=COX17=PD(80.0=51.3),PF067478=CHCH=WD(100=89.7)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCGCTATGAACTTCAGCGC
R:
CCGTCTTTCCTCATCACAGCT
Band lengths:
178-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]