GgaALTD0001466-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000003822 | COX19
Description
NA
Coordinates
chr14:2241865-2242408:-
Coord C1 exon
chr14:2242297-2242408
Coord A exon
chr14:2242293-2242296
Coord C2 exon
chr14:2241865-2241942
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGCG
5' ss Score
2.99
3' ss Seq
GTTGTTTCCGACGTAGGCAGCTC
3' ss Score
-0.88
Exon sequences
Seq C1 exon
GGGAGTGCAGCGCCTTCAAGGAGCGCTTCATGCAGTGCCTCCGCGACAGCGGCTTCGAGAGCGGCGCGTGCCGGGAGCGCGCCATGGCCTACCTGCAGTGCCGCATGGACAG
Seq A exon
GCAG
Seq C2 exon
CTCATGGCTAACGAACCTCTGGAAAAGCTGGGATTTAAAGACCTGATGGATGAGAAGTCGGAAGCAGAACCTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003822-2-3,3-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.538
Domain overlap (PFAM):
C1:
PF050518=COX17=PD(80.0=51.3),PF067478=CHCH=WD(100=89.7)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCCTACCTGCAGTGC
R:
CCAGGTTCTGCTTCCGACTTC
Band lengths:
104-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]