GgaINT0014559 @ galGal3
Intron Retention
Gene
ENSGALG00000003822 | COX19
Description
NA
Coordinates
chr14:2241865-2242408:-
Coord C1 exon
chr14:2242293-2242408
Coord A exon
chr14:2241943-2242292
Coord C2 exon
chr14:2241865-2241942
Length
350 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGCG
5' ss Score
2.99
3' ss Seq
GTTGTTTCCGACGTAGGCAGCTC
3' ss Score
-0.88
Exon sequences
Seq C1 exon
GGGAGTGCAGCGCCTTCAAGGAGCGCTTCATGCAGTGCCTCCGCGACAGCGGCTTCGAGAGCGGCGCGTGCCGGGAGCGCGCCATGGCCTACCTGCAGTGCCGCATGGACAGGCAG
Seq A exon
GTGGCGGCCGGGGGGCGCGCGGTGCTGCGGGCACGCGCTGCGCGTGCTCGGACGCAGCTGTGCCTTCCTCGTGCAGCAGCGCGCGCGGCCCGTGGTGAGGCCGGACGCCGCGCGGGGAGGGCTGAAGGGCGTTAGGAAGCACCGTGGGGCGGGCTGTGCGGAGGGAGGCTGTCCCGGTGCTGCCGTCCCCACAGCGACGTTTCTGAGGCTCTGCGTGGTGGCAGCCGCGCTGCGTGCCTTGGGTTTCTCTACAGCGAATAGTAGGGAGTGAAGCAGAAAATGACGCTGCTCTCTGTGCTCTAGAGCGTGTTGTGCAAAGTTGTTGTTTCTGTTGTTTCCGACGTAGGCAG
Seq C2 exon
CTCATGGCTAACGAACCTCTGGAAAAGCTGGGATTTAAAGACCTGATGGATGAGAAGTCGGAAGCAGAACCTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003822:ENSGALT00000006058:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.538
Domain overlap (PFAM):
C1:
PF050518=COX17=PD(80.0=51.3),PF067478=CHCH=WD(100=89.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGCGCCTTCAAGGAG
R:
CTTCCCAGGTTCTGCTTCCGA
Band lengths:
190-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]