MmuINT0041255 @ mm10
Intron Retention
Gene
ENSMUSG00000045438 | Cox19
Description
cytochrome c oxidase assembly protein 19 [Source:MGI Symbol;Acc:MGI:1915283]
Coordinates
chr5:139336189-139342674:-
Coord C1 exon
chr5:139342563-139342674
Coord A exon
chr5:139338376-139342562
Coord C2 exon
chr5:139336189-139338375
Length
4187 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ACAACATCTTTCTCTTCCAGGCA
3' ss Score
11
Exon sequences
Seq C1 exon
GTGAATGTAAAAGCTTTAAAGAAAAATTCATGAGGTGTCTCCGTGACAAGAACTATGAAAATGCTTTGTGCAGAAATGAATCTAAAGAGTATTTAATGTGCAGGATGCAAAG
Seq A exon
GTGAGTTCTATTTGTGTGTGTGTGTGTGTGTGCGCATTCACATGTGTGAGTGCTCATGATTGTGGTGAGCCACCGCGTGGGTGCTGGGAACTTGGTCTGTTGCTGGCCTGGATTCACTAGTTAGGTCGCTGACTACAGGCAAGCCAAGGGATCCCTCTCTGCCCCCAGTGCTGGGACCAGCACACCCAATTTTCTCGGGTTCTCGGGAGGGAACTCGGGTCCATTTTACCAACCCAGCCACCGCCCCTGCCACAGCAGAGTGGCTGATGTTTGCCAGGAGAAATCACAGTTTAGCCAGTGAGGAGGCCGCTAACGGCCCTGGAAACCTCCGTGAGTGACAAGCCACAGAGTGAGTGTCCACAGCTTTGTCCCTCCATCTTTAAGCTTTCAGAATCGTAGATCCTAGCGGCGCTGACTGAGCCCAACAGGTTTTCATGCCTTTCACATTCTCGGCCCAGTAAGAACACTCATGGCCTCGCGCTGTCCTCTGAAAGCTGTTTGAAATGCCACCGGGACAATGGCGACTTAAGCAGTAATGGATGATGATGGCCACCCCCACACCCACCCCAGGTTTACTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATCAAAGGCGTGCGCCACCACCGTCCGGCCCCAGGTTTACTTTTAAACAGAACAAAAACCAAAACCTGTGGCGCTCTGCCTTAGGACGAGAGCCATTCTACTGTAAATGTGCAGAAGCAGCTAGCACGCCAGTCCTTGGGGAAGGAGGCCTGTCCCCATCGCTGTGTACACAGGAACTCAGGCACCCCAGCCTCTCTCAAGATGTCAGTGGTCCGCTTAAGCCTGCTTTCTTTGTGTTTAACAAACCCAGACAAGTCCTAGAGGCATAGGCATGTGGGGGTGACAGTGTAGGTGTCTCAGCTCTGGCGGTGACCCCCTTCCAGATAGCTCATGGTTGGAACTGAGCCTCAGCAGATGGCTGAGAATTTCCTCTTGGCTCTGCTGAGCTTTACAAGAGGGCCAGAGTGATCCCAGCCTGGAAGGAGGCTGTGAGCAGGTTCCTGCCTTCCCCACAGCTCAACCCCTGGGTCTTGGTGTCTACAAAAGGAGAGGTTCCCACAGGCAAGCTGGACAGATTCAGCAAGTAAGAGCTTTAGTGGAGCCTGACACAGGATTGTCATCCTAACTGCTCAGGAAGCTGCGGCAGGAGAATGGTGAGGTTGGGGCCAGCCTCGGCTACAGAATAAGTTCAGAAACTATCTGGGCAATTTAGTAAGATCTTATCTCAAAATGATAAGAAAAACAGGGCTGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTAACAACCATCCGTAACAAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTTAAAAAAAAAAAAAAAAAGAAAGAAAAACAGGGCTGAGAATATAGCTCAGTGCTAGAGCACCTGCTTAAAATCCCCTGAGTGAAGGGCTGGGGTGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCCCCCAGGGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGAGTCCCCCAGTGAGGGGCTGGGGGCGTGGCTCAGTGGTGATGCATTCCACAGTTAAGTGAAGTCCTGGGTTCTGTCTACAGTACCCCCTCCATACCCCTTTCCAAACCTGAGCAGATTGTTTTGCCCGTAGTGCCTGGCACAGATGCATAAGTAGGGACTCCTACTTATGATTGCTTCGAGGGTGTGGCTACTTTGAGATCCTCTGGGGGGGTGACTAGTCTGCCTGGCAAGGCTCTGGACAGTACCAGCAGAGGTTCTTGCCTGTTTGTCTGTGGGGTGAGCTGAAGCAAGGCCTCCTAGTCCCCGTGCCACACTCGACACCACATAGAACACGTGCGTCAGAGTTGGGAGGGAAGGGCCTGCTTCCATGGCCTATGGGACCTCAGCTAGGCGAGTGCAGGCACCCAAGGAAACTTCTGGCTTTGTCCAGTGTTGGCAAGGGTGTTTTGGTTTGGTTGGTGGTTGGTGGGTTTGTAAATAAATGCAAGTAAGAAAATAAAGTTAAAATACTCCTTCTCGGGCCTCCGGGGCGCGGGGAACCTCGGGGGCTGCGGCTGTCGTCACATCTCAGCTGGCCGTGACCTTGCAGCTCTCCTGCCCCCACCTCCAGAGAGGCAGAGGTGACAGGGGCATGGAATGAGTGTTGCTGGGACAGGCAGGGATCACAGAGCCCTCAGGAAGGCTCCAGAGCACAGCTCAGGGCTCATCTTAGTGTCTCCGGCCTTAGAAATCCCAGGGACAGTTTTCTAGGGGTGTCCCCTTAGGTGACAGAGGCACATTGAGAGCATTCCGTGGCTTGACTTATTCATTTGTCTGTGTGCGTGTGAGGAAGCTGCTGTCTTTCTGTCTGTGGAACTCCAGGGTTGCTCCTGCCTCCACCTCCCCAGCTATGAGGTCACAAGCACACCTTGGTGGCCTTCCGTCTGTCGGTGGGGGCTGAGCATCAAGCATGGCCCCTTCTTGTGTCCAGAGCAAGAACTTCACCGACCAAACCGTCTCCTCGGCCGTTGTTTACTCATCTTTTGGGACAGGGGCTGTGATGGCCTCACTACAGCCTATTTCTGCCCCACACTGGACTCACAGATGTGAGCAAGACCTAAAGTGTCTGGTCTTCCTGTTAGCTGGGCCCAGGCCGGTGGGGACCCGTGGGAGCTGAGCCATGTCTTCTAAGCCATGTCCTTCCTGGCTGATATTTTTGTTGTTGTTGTTCCTTTTCTTGCTCTGAGCATCCAGTGGCAGTAAGAGCCAGCCTCGGTAGGCCTGTGACCTGTGGCTTCAGAGCCACAGAGGAGCCTCCCACAGTTACCATACTCATCTCTGCAACCACTGGGCAGATGGCCTGAAGGTAGGCCTTAGCTTCCCAGAGCTAGAATTCCTGAAGAGCTCCTGGGCAGGGGGGAGACATCTGTCCCTGTCTTTGGCAGATGTGGGGACATCTGCATCTCCAGACCATGAGCCACTTTCCTCCTGGTGCTTGCTTGCTGTCTGACCAGAGCCAATGAGACTCTGATCCTCGGCGTCTCCCTGGTTAGAGTGTGGCCTCCCAGCCGGTCCTCTCCTTCCATATCAGGACATTGGCACCCACAGGCCCTGGGCCCTGGGACTGTCTGCCCTTGGGGATCATGACTGTGAGTAAGGCAGAGATGGTGACCAGATTCACTGTGAGTGTCTACTAGCGTTCTGAGCTGCGGGAAGTGGAGTGTGGTGGGGGAGGGGCGTTTACTGAGGGAATGGAGCGTGGAGGATGGAGGGATCAGCTCGAGTGGGCAACAGCATGAGAGCCCTGCATGTGGACGGCTGGTCAGGAGGCAGGCTGGGGAACCCGGTGCTGGGTTTCCATCTATCTTCACAGGGCAGCTGTATTCCACGTAGCTGTAAAGGCGGTAGAGCCTCACGGGTGCTGGGATCATAGCACTGGTGACAAGGCTAGGTCATTCTATACCACTTTCTGGCCTCCTCTCTCCAAGTACCCCTTCACAGTGACCTGGAGGACTCTCCTCAATGCCTTTCTGCAGTGTGAGGGTGAAGAGGTCTTACCCCCAGCTATGTGCACCCCTAAAGTCTTCACAGGCGAGTCCACACAGCTATGAGGACACTTATCTAGTCCTAGCTCTCCCCATTTCAGCTTGCACCTGTGGGGTCATGTGACCCCACCCACATACCTGACCCCACCCATATCCTCAGCCCCTGTCCTTATGAGCTTGGACCGGCCATGTGGCTGGGAGGGACCGTGAGGCTCACATGACCTGTTGGCTTCTTGCCCTATGGGGAGGACACCACTCTCTGGGTCTGTTTTCCTGTTTTAGATCAGGGGTGGGGGTGGGCTCTGGAGGCCTGGGCAGGTGAATGAAGAAAAGAGCATGGTGGGATGGAGCTCTGCCCACCCCCCAGCCCTTCCTCCCCTCCACCCTGTGACAACATCTTTCTCTTCCAG
Seq C2 exon
GCAGCTGATGGCACCGGAGCCGCTAGAGAAGCTCGGCTTTAGAGACCTAATGGAAGGGAAGCCAGAGGCAAAGGATGAATGTTGAGAAGGGAGCCACAGGACCTTGTCCCCAGCCTGGAGCAGAGCTGAGCCCTTCTGCCCACAGTGCAGGGGGACCTGACACTCAGCCCGTGCTGCCCCGTGCAGGGGCTCTCCCTGGGGACTTTAGAACATGGCTCACCCCTGCAGCACACACCGAAATGTTTCCTCTGTTGACCTCGGTTCCCCTCTAGAGAGTGTGTTTTTCTTCCGTCTGTGTGTCACAGGACCCGTCAGGACTGAACCCTGCTGTGATTTGATATCCCGCCCAGAGTGGCTGTCACACCACAGAGCCCTGGCCAGCATTCCACAGCGACTCAGCCTGTCACAGATCTGAGTCCTCACACTGGAACCTGTCAATGAAACCAAGCGACAGGAAAATGTCCGCCTTTTGTGCTCACAGACTCATATCAGCTGGCTTCCCTTTCTCTGTGTTCTCTCCTGTGAACAAAGCTGGAATACAAAGTAGGAAGTGAGACACTGTTTGGCTTTTGACATATTTGACCAATTGTTTTAAGTGTTTTGAGACAGGGTCTCAAACTGCCTATGTAGCCAAGGATGGCTTCAAACTCTTGATCCTTCTGCCTCCGTGTCTGGGGTACTGGGGAGTGGAACCCAGGGTTCCCTGCAGGCTAGGCAAGTACTCTACTGCCTGAACCATGTCTCTAGCACAATTTCTTGCTTTTTAAATGACATTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATGGTAGCACTGTGTTTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATTTGTAGGTGGGTCAGAGGACAGCTTAAAGGAGTCTGTTCTTGCATGAGTGAGTGTCTCAGGCACTGAACTCGGCTCACCAGGCTGGGTAGATCTCCCAGCTCAGCTTCCGCTGTCCCAGTCTAGCAGCAGTTTGGGTTTATGCTGCATACTGTTTTCTGGTCACCTCAAACTGTTTCTAAACCTAGCTTTTCCTTTCAGTAGCCCAGTGTGTGCCTCCACAGGTCAGGTCAGCTGTGCACTAGGAGCTGGGCTAGCATCTTCCTTTTTCACTTTTGCACCCTGTTAGAGGAACACCATGTCTCTGTGTCACCCCTGGGTGCTGAGCACTGACCCTGTACTGTGAGCACCAAGCAGGGCTGAGCTGTGGCTGAGCCCAGGCCATCCTCAGAGTCGCTTGTGGGCTGTTTAAACCCCTGGCTGCCTTCATGCTGAGGCGGGTGATCCAAAGACACCAGCAGAATGCCAGCACCAGAAAGGGGGTGGGGGGGAGAGGGAGGAGAGGAGGACTCATCATATTCCTGTTGGTCTTAGGCAGCAGCTATGGTAGTAAGTAAGTAAGTAAGTAGGTAGTAAGTAAGTAGCAAGGCTACCACTACAGGGTCTGCTGATCCCCTCGGGGAGTTTACCCTTGCTCCACTGGACGTGAGTGCCTGAGAGCCCTGTGCCCTGTTACACAGAAAGGCTTCTTGGCCCGACCCACAGTTGTGCCCACTGGGGGTCTGCTTGTTTGTACGCACTCGCTCAGCTCAGACGTACAGTGTGGGGCGACACCAGTTTCGTGTGTACCACATTTCACATTTGCGCCTTGGTTTTTATCACCCGACGCTGGTGTCACCCCAGCACTGGTCATAATTGCAGTGATGGAGCAGCCAAGCCCTCTGACGACTGAGCCATCTCGTCAGCCATTTTGTTGTGTTTGACTTACTGAGAGATGGTTCACTCTGTAGCCAAGGCTGGTCTTGAACTCCGCTTCCACCTCCCAAGTGGAAGCCAGAATTAAATTCAGAGTCCTGCTATTTTCCAAGCCTTTGGTGTATCTCGTCAGCAAATGACAAACATACTTAACAGTCAAGAGCGGCAGAGTTTTAACGTTCTAGCGCATCACAGTGGCTCCATCCATGAGAGCTCCCCTGTCCACCCATCTCCACCGAGATGCCAGGAACACAGGGTAGCAATGTTGATGGCTTTGGGGACCGGAGTTGGAGGCTACATGGTTCCTTCCTGGAATCTTCACAATTACATTTTATAACAAGTGTGCATCACTTTTATAGAAACTATAAAATCCTTACTTGAAGGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045438:ENSMUST00000049630:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.268
Domain overlap (PFAM):
C1:
PF067478=CHCH=WD(100=92.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types