MmuINT0041255 @ mm9
Intron Retention
Gene
ENSMUSG00000045438 | Cox19
Description
COX19 cytochrome c oxidase assembly homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1915283]
Coordinates
chr5:139813776-139818628:-
Coord C1 exon
chr5:139818517-139818628
Coord A exon
chr5:139814330-139818516
Coord C2 exon
chr5:139813776-139814329
Length
4187 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ACAACATCTTTCTCTTCCAGGCA
3' ss Score
11
Exon sequences
Seq C1 exon
GTGAATGTAAAAGCTTTAAAGAAAAATTCATGAGGTGTCTCCGTGACAAGAACTATGAAAATGCTTTGTGCAGAAATGAATCTAAAGAGTATTTAATGTGCAGGATGCAAAG
Seq A exon
GTGAGTTCTATTTGTGTGTGTGTGTGTGTGTGCGCATTCACATGTGTGAGTGCTCATGATTGTGGTGAGCCACCGCGTGGGTGCTGGGAACTTGGTCTGTTGCTGGCCTGGATTCACTAGTTAGGTCGCTGACTACAGGCAAGCCAAGGGATCCCTCTCTGCCCCCAGTGCTGGGACCAGCACACCCAATTTTCTCGGGTTCTCGGGAGGGAACTCGGGTCCATTTTACCAACCCAGCCACCGCCCCTGCCACAGCAGAGTGGCTGATGTTTGCCAGGAGAAATCACAGTTTAGCCAGTGAGGAGGCCGCTAACGGCCCTGGAAACCTCCGTGAGTGACAAGCCACAGAGTGAGTGTCCACAGCTTTGTCCCTCCATCTTTAAGCTTTCAGAATCGTAGATCCTAGCGGCGCTGACTGAGCCCAACAGGTTTTCATGCCTTTCACATTCTCGGCCCAGTAAGAACACTCATGGCCTCGCGCTGTCCTCTGAAAGCTGTTTGAAATGCCACCGGGACAATGGCGACTTAAGCAGTAATGGATGATGATGGCCACCCCCACACCCACCCCAGGTTTACTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATCAAAGGCGTGCGCCACCACCGTCCGGCCCCAGGTTTACTTTTAAACAGAACAAAAACCAAAACCTGTGGCGCTCTGCCTTAGGACGAGAGCCATTCTACTGTAAATGTGCAGAAGCAGCTAGCACGCCAGTCCTTGGGGAAGGAGGCCTGTCCCCATCGCTGTGTACACAGGAACTCAGGCACCCCAGCCTCTCTCAAGATGTCAGTGGTCCGCTTAAGCCTGCTTTCTTTGTGTTTAACAAACCCAGACAAGTCCTAGAGGCATAGGCATGTGGGGGTGACAGTGTAGGTGTCTCAGCTCTGGCGGTGACCCCCTTCCAGATAGCTCATGGTTGGAACTGAGCCTCAGCAGATGGCTGAGAATTTCCTCTTGGCTCTGCTGAGCTTTACAAGAGGGCCAGAGTGATCCCAGCCTGGAAGGAGGCTGTGAGCAGGTTCCTGCCTTCCCCACAGCTCAACCCCTGGGTCTTGGTGTCTACAAAAGGAGAGGTTCCCACAGGCAAGCTGGACAGATTCAGCAAGTAAGAGCTTTAGTGGAGCCTGACACAGGATTGTCATCCTAACTGCTCAGGAAGCTGCGGCAGGAGAATGGTGAGGTTGGGGCCAGCCTCGGCTACAGAATAAGTTCAGAAACTATCTGGGCAATTTAGTAAGATCTTATCTCAAAATGATAAGAAAAACAGGGCTGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTAACAACCATCCGTAACAAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTTAAAAAAAAAAAAAAAAAGAAAGAAAAACAGGGCTGAGAATATAGCTCAGTGCTAGAGCACCTGCTTAAAATCCCCTGAGTGAAGGGCTGGGGTGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCCCCCAGGGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGAGTCCCCCAGTGAGGGGCTGGGGGCGTGGCTCAGTGGTGATGCATTCCACAGTTAAGTGAAGTCCTGGGTTCTGTCTACAGTACCCCCTCCATACCCCTTTCCAAACCTGAGCAGATTGTTTTGCCCGTAGTGCCTGGCACAGATGCATAAGTAGGGACTCCTACTTATGATTGCTTCGAGGGTGTGGCTACTTTGAGATCCTCTGGGGGGGTGACTAGTCTGCCTGGCAAGGCTCTGGACAGTACCAGCAGAGGTTCTTGCCTGTTTGTCTGTGGGGTGAGCTGAAGCAAGGCCTCCTAGTCCCCGTGCCACACTCGACACCACATAGAACACGTGCGTCAGAGTTGGGAGGGAAGGGCCTGCTTCCATGGCCTATGGGACCTCAGCTAGGCGAGTGCAGGCACCCAAGGAAACTTCTGGCTTTGTCCAGTGTTGGCAAGGGTGTTTTGGTTTGGTTGGTGGTTGGTGGGTTTGTAAATAAATGCAAGTAAGAAAATAAAGTTAAAATACTCCTTCTCGGGCCTCCGGGGCGCGGGGAACCTCGGGGGCTGCGGCTGTCGTCACATCTCAGCTGGCCGTGACCTTGCAGCTCTCCTGCCCCCACCTCCAGAGAGGCAGAGGTGACAGGGGCATGGAATGAGTGTTGCTGGGACAGGCAGGGATCACAGAGCCCTCAGGAAGGCTCCAGAGCACAGCTCAGGGCTCATCTTAGTGTCTCCGGCCTTAGAAATCCCAGGGACAGTTTTCTAGGGGTGTCCCCTTAGGTGACAGAGGCACATTGAGAGCATTCCGTGGCTTGACTTATTCATTTGTCTGTGTGCGTGTGAGGAAGCTGCTGTCTTTCTGTCTGTGGAACTCCAGGGTTGCTCCTGCCTCCACCTCCCCAGCTATGAGGTCACAAGCACACCTTGGTGGCCTTCCGTCTGTCGGTGGGGGCTGAGCATCAAGCATGGCCCCTTCTTGTGTCCAGAGCAAGAACTTCACCGACCAAACCGTCTCCTCGGCCGTTGTTTACTCATCTTTTGGGACAGGGGCTGTGATGGCCTCACTACAGCCTATTTCTGCCCCACACTGGACTCACAGATGTGAGCAAGACCTAAAGTGTCTGGTCTTCCTGTTAGCTGGGCCCAGGCCGGTGGGGACCCGTGGGAGCTGAGCCATGTCTTCTAAGCCATGTCCTTCCTGGCTGATATTTTTGTTGTTGTTGTTCCTTTTCTTGCTCTGAGCATCCAGTGGCAGTAAGAGCCAGCCTCGGTAGGCCTGTGACCTGTGGCTTCAGAGCCACAGAGGAGCCTCCCACAGTTACCATACTCATCTCTGCAACCACTGGGCAGATGGCCTGAAGGTAGGCCTTAGCTTCCCAGAGCTAGAATTCCTGAAGAGCTCCTGGGCAGGGGGGAGACATCTGTCCCTGTCTTTGGCAGATGTGGGGACATCTGCATCTCCAGACCATGAGCCACTTTCCTCCTGGTGCTTGCTTGCTGTCTGACCAGAGCCAATGAGACTCTGATCCTCGGCGTCTCCCTGGTTAGAGTGTGGCCTCCCAGCCGGTCCTCTCCTTCCATATCAGGACATTGGCACCCACAGGCCCTGGGCCCTGGGACTGTCTGCCCTTGGGGATCATGACTGTGAGTAAGGCAGAGATGGTGACCAGATTCACTGTGAGTGTCTACTAGCGTTCTGAGCTGCGGGAAGTGGAGTGTGGTGGGGGAGGGGCGTTTACTGAGGGAATGGAGCGTGGAGGATGGAGGGATCAGCTCGAGTGGGCAACAGCATGAGAGCCCTGCATGTGGACGGCTGGTCAGGAGGCAGGCTGGGGAACCCGGTGCTGGGTTTCCATCTATCTTCACAGGGCAGCTGTATTCCACGTAGCTGTAAAGGCGGTAGAGCCTCACGGGTGCTGGGATCATAGCACTGGTGACAAGGCTAGGTCATTCTATACCACTTTCTGGCCTCCTCTCTCCAAGTACCCCTTCACAGTGACCTGGAGGACTCTCCTCAATGCCTTTCTGCAGTGTGAGGGTGAAGAGGTCTTACCCCCAGCTATGTGCACCCCTAAAGTCTTCACAGGCGAGTCCACACAGCTATGAGGACACTTATCTAGTCCTAGCTCTCCCCATTTCAGCTTGCACCTGTGGGGTCATGTGACCCCACCCACATACCTGACCCCACCCATATCCTCAGCCCCTGTCCTTATGAGCTTGGACCGGCCATGTGGCTGGGAGGGACCGTGAGGCTCACATGACCTGTTGGCTTCTTGCCCTATGGGGAGGACACCACTCTCTGGGTCTGTTTTCCTGTTTTAGATCAGGGGTGGGGGTGGGCTCTGGAGGCCTGGGCAGGTGAATGAAGAAAAGAGCATGGTGGGATGGAGCTCTGCCCACCCCCCAGCCCTTCCTCCCCTCCACCCTGTGACAACATCTTTCTCTTCCAG
Seq C2 exon
GCAGCTGATGGCACCGGAGCCGCTAGAGAAGCTCGGCTTTAGAGACCTAATGGAAGGGAAGCCAGAGGCAAAGGATGAATGTTGAGAAGGGAGCCACAGGACCTTGTCCCCAGCCTGGAGCAGAGCTGAGCCCTTCTGCCCACAGTGCAGGGGGACCTGACACTCAGCCCGTGCTGCCCCGTGCAGGGGCTCTCCCTGGGGACTTTAGAACATGGCTCACCCCTGCAGCACACACCGAAATGTTTCCTCTGTTGACCTCGGTTCCCCTCTAGAGAGTGTGTTTTTCTTCCGTCTGTGTGTCACAGGACCCGTCAGGACTGAACCCTGCTGTGATTTGATATCCCGCCCAGAGTGGCTGTCACACCACAGAGCCCTGGCCAGCATTCCACAGCGACTCAGCCTGTCACAGATCTGAGTCCTCACACTGGAACCTGTCAATGAAACCAAGCGACAGGAAAATGTCCGCCTTTTGTGCTCACAGACTCATATCAGCTGGCTTCCCTTTCTCTGTGTTCTCTCCTGTGAACAAAGCTGGAATACAAAGTAGGAAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045438-Cox19:NM_197980:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.321
Domain overlap (PFAM):
C1:
PF067478=CHCH=WD(100=92.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: