GgaINT1010263 @ galGal4
Intron Retention
Gene
ENSGALG00000027698 | COX19
Description
cytochrome c oxidase assembly protein COX19 [Source:RefSeq peptide;Acc:NP_001243736]
Coordinates
chr14:2234035-2235795:-
Coord C1 exon
chr14:2235684-2235795
Coord A exon
chr14:2235334-2235683
Coord C2 exon
chr14:2234035-2235333
Length
350 bp
Sequences
Splice sites
5' ss Seq
CAGGCAGGT
5' ss Score
2.53
3' ss Seq
TTCTGTTGTTTCCGACGTAGGCA
3' ss Score
7.82
Exon sequences
Seq C1 exon
GGGAGTGCAGCGCCTTCAAGGAGCGCTTCATGCAGTGCCTCCGCGACAGCGGCTTCGAGAGCGGCGCGTGCCGGGAGCGCGCCATGGCCTACCTGCAGTGCCGCATGGACAG
Seq A exon
GCAGGTGGCGGCCGGGGGGCGCGCGGTGCTGCGGGCACGCGCTGCGCGTGCTCGGACGCAGCTGTGCCTTCCTCGTGCAGCAGCGCGCGCGGCCCGTGGTGAGGCCGGACGCCGCGCGGGGAGGGCTGAAGGGCGTTAGGAAGCACCGTGGGGCGGGCTGTGCGGAGGGAGGCTGTCCCGGTGCTGCCGTCCCCACAGCGACGTTTCTGAGGCTCTGCGTGGTGGCAGCCGCGCTGCGTGCCTTGGGTTTCTCTACAGCGAATAGTAGGGAGTGAAGCAGAAAATGACGCTGCTCTCTGTGCTCTAGAGCGTGTTGTGCAAAGTTGTTGTTTCTGTTGTTTCCGACGTAG
Seq C2 exon
GCAGCTCATGGCTAACGAACCTCTGGAAAAGCTGGGATTTAAAGACCTGATGGATGAGAAGTCGGAAGCAGAACCTGGGAAGCTGTGATGAGGAAAGACGGCTGTACCCCTCCCAGCCGTACCTCACCGCTCACATGCAGGAGGCGTAACTCCTGTGGAGTGCACGTTGTATTCGTATTGCGATAGGAAGCGCTTTGTGAAGGAGCCTTTTCTTCCAAAATGTTCTTTCCTAAAATAAGACTGTTAAAGTGAACCAAAGCACTGCCTTTGTTTGCTTTCCTGGGGTGTTTCTTAGCTTCTTTCCTTTAGATTCTCCAGCCTGCTCTTAAGGGTCGCTGGTACTGCTTCACCTGGCAGAAAGCAGTGGTTGCCTGAAGTGCTCTCCGTGTCTGCGGGGGCAGTAAACTCTTGCTTTAAAAAAGCAACAACAACGCAGCAGCCCTCCACCTCTGTTGTACACCTGGTGAACAATAGGCTACTGTTACGTGGGCATTACTGATGTGCTTACAGCAGGCACTTTTCAGGTGGAAATAAAGCTGTTGTGGTACTTGCAAATTTCTCTTTATTAAATGCTGTTGTTAATTTCCTTCTCTGGGATGATCTCCTTTGTTCCAGGCTGCGGTTCCAGCATCACCTGTAGTTATTCTGCTTTTGTTTAGCATGCCAACGTTTGACCTTTATTTCATCATTTAACCAGAAGTCGTTCATTACAGTTGTCTTCGTTTCTCCACTTGGTGCTGCCATGTTGTTTTTCACATCCTTATGGTGAAACTGGGGGAAAGATGGCCATGGTATTTATTTGTCTTTGAAGTAAATGTGAATTATTTATATAAACATGTCTGGACTTTTCTTTTAAACGCATGTTTTTAGGGAGGCACACACTTAGCTGGTGCTGTTCTCTTACGCTTCCTTCTTTATTTAGTCTCCTCTGTGTGGTACATCCAGCCATTCCTGTTTCTGTTTTCAGAGGGATCCAGGACAGAGTAAAATAATACTCTCTGCCTTTCATGTTGGTGGATGGAAACGAGGGTTACATTGTTGCTCAGGTCTGATCTGATGGAGGGAGTGCGGACGGTTCAGAACAGATCTGTATTTGAAAAGAGTATTCAGTTTGCTTGCTGCTGTGTTTTTAGTCTGCTTCATTCCACTGCTTAAACTGTCTTTTGATGAGATTAATACATTGACAGAAAAGAAAGCAGAGGTTCTATTGCTGAAACAGATGTTAAAAGACTTCATATTAAGTTGCTCAACGAAAGCTTTCTTTTAGTGATGCTGAATAAAAATTAAAATAATGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027698:ENSGALT00000045850:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.414
Domain overlap (PFAM):
C1:
PF067478=CHCH=WD(100=92.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCTGCAGTGCCGCATG
R:
CCCTTAAGAGCAGGCTGGAGA
Band lengths:
356-706
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]