BtaINT0042981 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015253 | COX19
Description
Bos taurus COX19 cytochrome c oxidase assembly homolog (S. cerevisiae) (COX19), mRNA. [Source:RefSeq mRNA;Acc:NM_001109966]
Coordinates
chr25:42317046-42321964:+
Coord C1 exon
chr25:42317046-42317157
Coord A exon
chr25:42317158-42319540
Coord C2 exon
chr25:42319541-42321964
Length
2383 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
GCTCTCACTTTTCCTTTCAGGCA
3' ss Score
10.13
Exon sequences
Seq C1 exon
GTGAATGTAAAAGCTTTAAAGAGAAATTCATGAAGTGTCTCCGGGACAATAATTTTGAAAATGCTTTGTGCAGAAATGAATCAAAAGAGTATCTGGAGTGCAGGATGGAAAG
Seq A exon
GCAAGTACCTGCCAGCCGTGATTTATGTCTTCTCCGCCCACCGTGTCTCCAGCTGAGATGTTTGTCCCAGGAGGCCTCACCCAGGCCTGGCTTCTCCTTGTGTTTGGACCCGAAGGGCTGCCTGCCTGTGAAATTGAGGCATTTCGGAGATGAGTTGTACTCAGAGTTGTTGGCAGCCGTGGGAACCTTTTCTCCAGTGACAGCCTTGGACGTGATTGCATTCCGCACAGTTTTCTCTTTCCAAATGTGTGATGTGTCATTCAGGTTTCACAGTCGTACATCATAAAAACGCTGACTGAGTCAAAAGATTTGTGGGTACAGAGCTTATTTCTTTAAACATTCTCAGAACATAAAAATACATGCTGTTTTGTTCGACGTCCGCTCAGAGCCGTTTGTAGTGTTGACAGGCAAGACAGTGGGCCCGAGAAACGGTGAAAGACAAGTGAGTCTTCCCGTCTCACCCGGAGTTCACAAGACCCACCTCTAAGCAAAACAAAAACTCTTCTAACTGATCCGTTGAGATTTTACTGCAGAAGTACCATTGTAAAGCTTCATCAGGAAAACATGTAACCCGTTATTGTGTGCTTGGGTGGAAACTTTCATTTCTGCCTTTTGAGCCCGTTGTTTGCTCACAAAGGAACCCAGGCCGTCAGAGGCCTTGTCTGAAGACAGGCTGACAAAAAGCAGTCCACTCTGGGCCTGTTTTCAGTATTTCCTTAACAGACTCAGATGTTCCCCTCCCGGCAAGCTCCGCTGTGCTTCTTGGACCCCAGGTGTGTGGAGGGTCTGCAGACATTTGGGATTTTGAGGGAGATGGGCCTTCTTGGTGCTTGGCCCTCAGGTGGCACCCTTCTCCTGCCTCGTGAGGCACACAGGCTCACAGGTGTTGTGGGTTAACGATGGGCCGGCTCTGACATCTCTACATAGTGTGTTGGCCGGATCTGCATGCTTCCCTCACTCTTAAATCAAGACACTGAACTCAGTGAGTCTCTTCTTGGTACTGCTGAGCCTTGGTGACAGAGTTTGGAGCTCGTCTCTGCCCTGTGCCTCCCCAAAGCTGGGGTCACCATCCCCGAGTCGGTCATCCCTGGGCCGGCACAGGGATGCCTGGAGTGTTCAGCTGCTTTGGTTCCAGAGCCACTCCTGCTGTGAGAGAGGCCCTCCTGGCAGGGCCCGCAGAAGGGCCGTCTTTTTCCTGTTCGCCTCTGGGCCTCTGAGGAAGGCCCGCAGATGGGAATGCATCAGCTGCTCTGTGGGTTCCACGATTCAGGCGGCATCACTGGTTGGTGAGGCTGCATTTGGTTGTGAGGGGTGTATGTGTTTCTAACTTGGTCCGTATCTTGCCCACTTTCGTCTGCATCACTCTTTTAAAAAGCTTCTTCCCTTCCGCTTTTTTCCTTTTTGCTGATACCCACACCTTACTTTTGTGTACTTCACACGCGTCTTTTTAAGAACTGGACCTCGGTAGAATTTGTCAGTTGTCTCACACGGGACCCGTTGGCCTGGAGTGGATGTGTCTGCTGCTGAGGATGGGGCTCTGCTTCCTCACGGCAGCTTCTGTTAACATTGGGCTTGCACGGTCAGCAGAGACACAGCGAATCCACGTGGGATCCAAGACCTCACGTCGGCCGGGCCTCCTGACCTGGTGCGGAGTGTAGAGCATCTGGTTCTGGGAAAGCGCCGGGCCTGACCAGGTGAGGCCCAGGCGCTTCCCCCAGGAGGGCCTGTCCTGACCTTGCCGCTCCCAGGCTGCTTGTCCTCGGCCTGTGGCCCGTCCTCTGCCCTCACGGTCCACAGTGCTGCATCTTCAGGTCCTCCCGTCTCTTTTCATCTTTTCTTTCTGAGCAGAGGCAGCCAAGGGTCTCTGATTTTAAGGATCCTGGGATTAGGTTGGGTCCCCTTGGATAATCCAAGGTGGTCTCTCTGAGTTGGCTGATGGGCAGCCTTGTTTCCTCAGCAGCCTTAATACCAACCCCCTGCCGCGCTGGAATCAGATCTCACTCAGATTCTAGGGGTCAGGGTGTCACCTGGGGACCCTGGCCCTGTCAACCACGTTGTGTCTGAGTGGCCAATTCTAAGAACCGTGTCCTGACAAGGTGTAGTGGGAGTTCGTCGTTATTTGCCTCCTCGGGTTTCAGGAGCGTCTCATGCATTCCGTGACTGGGGGGTTAGTGTAATCTGTTGCCAGGTAGGTTCCGTGAACTGGTGTTTGTGACTCTGGGGAAGTTGTCCTAAGGGCTGTTGCCAAGCCTCTGGGTTTGTGGGTGTGGCGGGCAGGGGCCCAGGGGCCTGCACACAGGAGCACGGCAGGGTGGGGGTCTGAGGGTGCTGTTCCAGGAGGGAGCGGCGCGTGGACCCTGACAGCTCTCACTTTTCCTTTCAG
Seq C2 exon
GCAACTGATGGCACAGGAACCCCTGGAAAAGCTGGGATTTGGAGATTTGATTGATGGGAAGTCAGACAAAAACTGAGCTGTGCCAGGGGGAAGCCCGCAGCTGTGTGGGGTCGTCCGGACTCCTGCCGCCCCAGCAGCGTGTTCATAGGTACCGTGGCTCAGAAGGGGACTGTGGGGGTGCCCGCGAGATGCCGCTCGGAACCACGCCAGACGCCCCTCCCTGGTGGATGTGCCTTGAGGCTAGGAAATGGGTCGTCTTCTGAAGCTCCCGAAAGGATTTTGGAAAAGCGGTGTCCCTTTTGGATCCCTGTTTCCCTCAGGCTTGTGAAGGTTTATCCTAAGTTCGCGTGGGTGGCAGGGCCCCCGGGGAGGTGAGGTGCCAGGTGGCGTCTGCCCACCGAGAGGGCACTGTGGGCGCCAGTGAGCTGCTGGGTTCACGTCACAGGCTGTGTGTGTCCTTTCTGTGCTGGTAGCGTTCAGCCCAGCTCATTACGGAGAAGCGACGTAGGCATCAGGAAGCCGTTCCTAGCAAGTGGGCTGCTCTTTGTACTCACAGCATATACTCTGTTCATCTCCTTTTCTTTTCCTTTTTTTTTTAAACAAAAACAGCGGATAAGCCTGGAAGGGGAAACTGGCTTTTGACGTATCTGACTTCTTTTTTCTGGTGATGCCTGAACACCACGTGTCTTTCTGAACCGTATTGGGTGACACTTGTACAGTCAGATGTTTAGTTTCAAGAAGTCATCTGCTGTAACCGAGGAGCGGGCCGTCTGCCCTTGTCAGGTGGGCACACAGCGCCCTCTGGCGCCTTTCCTCTGAGGAGCGGCCGAGCCTACAGCCAGCCCCGCTTCTTGGCCGTGAGGGGTCAGGGCAGCGTGGGCCCGAGTGCTGTCAGACCCCAGGGTGCAGACCCCAGGGCAGTGTTTCTGGGGCGCCTTGTAGGTTCAGAACCTCAGTGGAGACCCTGGACCTGCCCTGTGACTGCCTCCCTGGCCCCCAGTCAGCTGAGTTTTGTCCCGGTGTGGCCAGTGGGAGGGGGTGCCAGGAATACCCAGGTGAGTGCCCTGACCCCCTCCTGCCTGGTGGCCCAGGCCAGCTGTGGGGAGCCCTCTTGCCTCCCCGGCCACGTCCAGTTGTCTGCATGGCGTCCCTTCCTCGGTCCTGCGGGCAGCCGTGCTCGCTCAGGCCCTGCCCTCGCTCCCTCCAAGGCCGGCCGTCTGCCGGGGGCTCTGGCCCCGCTGGCCCTATGGGGCTCCAGCCCCGGCGCTCCGTCTGTGCTTTGTCACTGTGCAGCATCGTCTCTGTCTACGCTTCCAGCTAGTTTATGAAAACCCTTGCTTTTTATCACCAAAGCGAGCCATGGAAGTATCCAGTGTGATGTTTCACATGTACAGGGTTACTCATTGCAGCATTGTTTGTAATTGTAAAGCTTTGGGGTGACCCAGCCACCTGTGCTTATTCCTGACGCAGGGCCCTGGGTGGCTGCAGGAAGGGCTGGGGGAGACCACGGTGTGCCCTGCATGGCCCTGCAGGTGGTGTGAGAGGGAACTCGGGGCCCAGAAGGCAGCGTGGTGGGAGAGGGCCGTGGGTAGAGAAGCAGATGTACAGAAGTGTGTGCAGAAGCGTGTGCATGCACTCATCTGTGTTCATACGGACATCCCTTTGCTCTGGGGCCTGGGGGCCTGGGGGACCCCTGGCAGTGAGGGGCTTGCCTAATGGCTGACTGATTTGAGCCTCTCTCCAGCAGGAAGACCCAGGGCCAGAAAGTCCATTTGACCCTGGATCTTCTTGTGTCAGACAGTAAGGAGTTGCCGAAGCCTTGGTGGACTTGTCGGGAGCGTGCGACAGGGCTCCCAGTGGCCTGGTTGGCAGCAGCAGGAACGACTGTTAGGGTTTGGCCACAGCATCAGTTCCTGCCTGGGAGTCCCTGCTGAGGGAGTCACGAGTGGAGCAAACGTTCCAGCACAGGAAGGGGACAGCCCTCCTCCCAGCCCTGGCCCGTGTGGAAGGGCGGGCCATCCGGGCATCCGTGTGTCTGGAGGTGGGTGGGCAGTGTTAGGTGGAACGGGTTTGCCTGTTCTGGAGGACGCCCCAGAAAGCACTCAACCAACAGCCGAAACCTCTGGGATGTTGCCCGTGGCACCTGCCCTGATCTGCCCCAAGGAGGAGGCGTCACTGCTGTTTTCTCTGAGCGCATCACCTCCGTCTCTGAGGACACACCGATGTGCCCGGCCTGAGGGCCAAGCCTGGTGTGAGGACCCACGGTGCCCTCCCCGAGGACGGGCGAAGGGCTGCTGGTTGGGGCTGCAGGTCGGTCACAGCGTATCATGTCCGTGCACACAGGGTGTCCTCGGGAGAAGCGGGCAAACTCTGGCCTGCTTCTGCAACTTTTGGAAGTCTGGAGTTATTTCAAAATAAAGAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015253:ENSBTAT00000020289:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.080
Domain overlap (PFAM):
C1:
PF067478=CHCH=WD(100=92.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]