RnoINT0041064 @ rn6
Intron Retention
Gene
ENSRNOG00000050052 | Cox19
Description
COX19 cytochrome c oxidase assembly factor [Source:RGD Symbol;Acc:1305631]
Coordinates
chr12:17398244-17405103:+
Coord C1 exon
chr12:17398244-17398355
Coord A exon
chr12:17398356-17402677
Coord C2 exon
chr12:17402678-17405103
Length
4322 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GCAGCATCTTTCTCTTCCAGGCA
3' ss Score
8.33
Exon sequences
Seq C1 exon
GTGAGTGTAAAAGCTTTAAGGAAAAATTCATGAAGTGTCTCCGCGACAAGAACTATGAAAATGCTCTGTGCAGAAATGAATCTAAAGAGTATTTAATGTGCAGGATGCAAAG
Seq A exon
GTGAGTTCTATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGGGTGTGTATGTGTCTGGGTGTGTGTGTGTGTGTGTGTGCTCATGTGTGTGTGTGTCTGTGTGTGTGTGTGCTCATGTGTGTGTCTGTATGTGTGTGTGCGTGTGTGTGTGGGGGGGGGTGTACGCACGGGTGCACTCTTGTTTGTGGTGAGCCACCATGTGGGTGCTGGGAACTGGGTCTGTGCTGGCCTGGATTCACCAATTTGGCGAGGGTGACTAAAGACGCGCTAAGGGGTCCTCACATCTCTGCCCCCCGGTGCTGGGATTGCAAACAGACCAGCACACCCAGCTTTCTTTCTGTGGGTTCTGGGGAGGGAAGTCAGATCCATTTTACCAACCCAGCCACGGCCCTAGCTGATGTTTGCCTGGAGAAATCACAGCTTAGCGGATGAGGTGGCCTGAGGCTGCTAACTGCCTTGGGAACCTCTTCGTGAGTGACAGCTGTGTCCACAGCCCCTATTCCTCAGAGCTTTGTCCCTCCTTTATTAAGTCCTCAGAGTCGTAGATCCCAGCAGCTCTGACCGAGCCAACAGGTTCTCATGCCTTTCACAGTCTAGGCCCGTAAGAACATGCATTCATAGCATCTTCACTGAAAGCTGTTTGGAATGTCACCTGTCACCAGGACAATAGGCTACTTAAGCCATGATGGATGATGGCGGTCGCACCTCCCCACCTCCAAGTTTACTTTTAAACAGAACAAAACCCGAACTCTCTGGAGCTTTCCTTAGAATGAGAGCCATTCTGACTGTAAGTGCAAAGCAGCAACTAGCACGTCAGAACAGGGAAGGGGGCCTGTCTCCATTGTGCACACAGGAACTCAGGCCCCGCAGCCTCTCAAGATGTCAGCCGTCCACTTAAGCCTGCTTTGTGTTTAACAAACCCAGACAAGTCCCAGAGGTCTAGGCATGTGGGGTTACAGTGTGGGTGTTTCAGCTCTGGTGGTGGGGACAACTTAACTGTAAGGTCTTGCCCTGCCGTCGTCGCAAATGCTGCTGGAGTCTGTCCTGATCTTGCCTCTTCCAGATGGCTCAGGGCTGGAACTGAGCCTCAGCACGGCTGCCTGTGACCTCAGAAGATAGCCAAGAATTTCTTCTTGGCTCTGCTGAGCTTTAGTAGAAGGCCAAAGTAATACCAGCCTGGAATGAGGATGGGAGGGGCTTCTGCCCTCCCAGGCTCAGTTCCTGTGTCTTGGTGTCTACTAAAGGAGGGGCTCCCACAGATAGGCTAGGCAAATTCAGCAAGTTAAGAGCTTTATTGGAGCCTGTAACACAGGCCTGTCATCCCAGCTGCTCAAGAAGCTAAGGCAGGAGGATGGTAAGGTTGGGGCCAGGCTAGGCTACAGATTGAATTCAGAAACCATCTGGGCAATTTAGTAAGATTCTATCTCAGAATAATAAAAACAGGGTTCAGGATATAGCTCAGTGGTAGAGCCCCTGCCTAGAATCCCCAGTGAGGGGCTGGGGTTGTGGCTCAGTAGTAGAGCCCCTGCCTAGAATCCCCCAGTTAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCACCTGCCTAGAATCCCCCAGTGAGGGGCTGGGGGCGTGGCTCAGTGGTAGTACATTCCACAGTTGTGTGAGGTCCTGGGTTCTGTCTACAGTATTCCTTCCATGCCCTTTCCCCAAAACAAGCAGATTTGTTTGGACCCAAGTACCTGGCACAGATTCGCAGGCACTCCTACCTATGATTGCTTTGAGGGTGTGGCTGGTTTGAGATCCCCTTGTCTGCCTGGCGAGGCTTCTGGGTAGGACTAGTAGAGGTTCTTGCCTGTTTGTCAATGGGGTGAGCTGCAGCAAGGCCTCCTAGTCCCCATGCCTCTGTGCCAACTCAGCACCGTGTGGAACAGGTGCCTCAGAGATGGGAAGGAAGGACCTGCCTCCATGACCTGTGGGGCCTCAGCTAGACAAGTGCAGGCACGCAAGGAAGCCTTTGCTTTTGTCCAGGGTTGGGAAGGGGTTTTTGGTTTTGCTGTTTGGTTGGTGGATTTGGCTTATTATTATAAGCTGCTGTTATATTGTTAAGAAAGGCTCAATCTAATAGCACAGACTGGCCTGGGACTTCTGGCAATCCTGCTGCCTGGGCCTCCTGAGTATTGGGACACCATGCTTGGCTGGTTCCTTATTTTGTTAGGCTCGTTGTTAATGAGCCCATCAGACAGACAGTTGAAGTTGACCTCGCACGCGTGCAGAGCACACACACATAATAAATGCATGAGCAAGTAAGTGCGATTAAGAAAGTAAAATTGAAATATTCCTCCTTAGGCCTCCTGGGCGTGGGGAACCTCGGGGGCTGGGTCTGCCTGAACAGCTCAGCTGACCATGACCTCGCAACCCTCCTTTCCCCACCTCCAGAGAGGCACAGGTAACGGGTGGAATGAATGATGCTGGGACAGGCAGGGATGGCTGAGCCCTCAGGATGGCTCCAGAGCACAGCTCAGGGCTCATCTCAGTGTCTCTGGCCTTAGAAATCCCAAGGTGTCTCCTTAGGCGGCACATGGAGAGCATTCTTTTGGCCTGACTTATTTATCTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACGTGTGTGTGTGTGTGTACGCATGCGCGACCTTGGGTTTTGTTTGTCAGGGGTCACCCATCCCACATTCTCAGAGTCTCAATGGCCTAGAGCTCACCGATGGACCCTGTTGGCTGTCCATGCACTCCAGGGGTCCTCTGGCCTCTGCCTCCCGAGCACTGGAGTTACAAGCACGCCTTGGCGGGCTTCTTTCTATACATGGGTCCTTCCCGTTCACCAAGCACTTCGCTATCCCCACTGGCCATATTTTACTCACCTTTGGGACAGAATCTGTGATCCCAGGCTGGCCTGGCCCTTTCTACGCCTGTTTCTGCCCCCACACTGGGCTCACAGATGTGAGCATGACCTGAAGTCTCTGATCTTCCTGGCAGCTGGGCCTAGGCCAGTGGAGACCTGAGGGAGCGAAATGGTGGTCTTCTGAGCCACATCCTCCCTGGCTGGTAATTTTGCTTCCTCTGATCAAGCAATGGCAGTAAGAGCCAGCCTCAGTGGGCCTGCCTGCCACCTGTGGCTTCAGAGCCAGACAAGCCTCCCACAGTTAGACACAGCTCTGCAGTCATTGGGCAGACAGCCTGAGGGTAGGCCTTAGTCGCCATGGCTAGAGTCCTATGTTCATGAAGAGCTTATGGGGAGGGGGGCGACCGTCCCTGTCCTTGGCAGATATGGGGGCATCTCCAGACCATGAGGCCCTTTCCTCCCAATGCTCGCTCTGATCCTCAGTGTCTCTCTGGGCAGAGTGTGACCTCCAAGTCAGCCCTCTCCTCCCACATCAGGACATTGGCACCCACGGGCCCCGGCCCCTGGGAGTGTCTGTCTTTGGGGATCATTACTGTGAGTAAGAAGGCAGAGACGACAAGATGGTAACCAGCATTCGGAGCCACGGGAGGGGGAGGTGGTAGGGGAGGGGAGTTTACTGTGGGGGTGTAATGTGGAGAAGGGACGTGTGAGCGAGCGGGCTGGGCAGCAGCGTGAGGGCCCCGAGTGTGGATGGCTGACTGGGAGGCAGGCTAGAGAACCCAGTGCTGGGTTTCTATCCATTGTCACAGGCAGCCGTATTCCAGGTAACTGTAAAGGTGATGAGCTTAGAGCCTCACAGGTGCTGGGATCATGGCACTAGTGACAAGGCTGGGCCATTCTGTCCCATGCTCTGGCCTCCTGTCTCCCCAAGTACACTTTCACAATGACCTGGAGGTCAAAGTGGACATAGTCTCTTCAATGTCTTCCCACAGTGTGGGGGTGAAGAGGTCTTGCCCCCAGCTATGTGCACCCCTAAAGTCTGCATAGGCAAGTAGCTCAGTTCTGTGTACACCTGAATCCTCATCCCTGACCCTCCTTGGGGTCCCCACACAGCTTCGAGGACACTTACCTAGCCTCAGCTCTCTCCATTTCAGCTCAAACCTATGGGTCGTATGACCCCACCCACATACCTGACTCTGCCCACATCCTCAGCCCCTGACCTTGTGAGCTTGGGCTGTCAGTGTGTCTGGGAGGGACGGACCTTGGGGCTCACATGACCTGTTAGATCCTTGCCCTATGGGGAGGACACTGCTCTTTGGGTCCGTTTTCCTGTTTTAGAATAGGGATGCTGGAAGTTTGGGCAGGTGAATGAATGAAAGGCATGGTGGGACGGAGCCCTGTTCCCCCTACTTTTCCTTCCCCCATGGCAGCATCTTTCTCTTCCAG
Seq C2 exon
GCAGCTGATGGCACCAGAACCACTAGAGAAACTCGGCTTTAGAGACATAATGGAGGAGAAACCGGAGGCAAAGGACAAATGTTGAGAATCACTGGGCTGTGTCCCCCTACCTGGAGCAGAGCTGAGCCCTTCTGCCCACCGTGGAGAGAGCTGAGCCATCCTGTGCTGCCCAGAGGAGGGGCTCTCCGTGTTGACTTTGGCTCATCCCTGCAGCATAGACCAGACTGCTTCCTCTACTGACCACACTTCTGCTTCAGAGAGTGGTTTTCTCCTGTCTGTGTGTGTCACAGGATCTGCTCAGGGCTGAACACTGATGTGATATGATATCCCACCTAGTGTGGCCGTCACACCAGAGGCCCTGGACAGCATTCCACAGTGACTCAACCTGAGTCCTCACACCGGAACCTGTCAGCGAAACCAAGCGACAGCAAAATGTCTGCCTTTTGTGCTCACAGACGCACATCATCTTGCTTCCCCTTCTCTTGTGTTCTTTGCTTTGAACAAAACTGGAATACAAAGTAGGAAGTGAGAAATAGTTTGGCTTTTGACATAGTTGACCTCCTGTTTTAAGTGTTTTGAGACAGGGTCTCAGACCGCCCGTGTACCCAAGGATGACCTCGAACTCTTGATCCTTCTGCCTCCATGTCTAGGGTATTGGGGCATGGAACCCAGGGCTCCCTGCACGATAGGCAAGCACTCTCTCAGCTGAACCGTGTCTCCAGCTAGGGAAGCACTGTATCTCAGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAGAGGACAACTTAGAGGAGTCCGATCTCTCCTTGCCCAAGTGAGTGTCTCAGGGATTGAACTCGGGTCACCAGGCTTGGTAGATGTCTCAGCTCAACTTCCATTCCCCCAGTCTAGGAGCAGATGGCTTCATGACGCGGGTTGGGTTATTTTCTGGTCGTCTCAAGCTGTCTGTAAACCTGGCTTTTCCTTTCAGTGGCCCACCGCATGCCTCCACAGGGCGGGTCAGCCACGCACAGAGGCTGGGCTAGGATCTATCCCTTTTCCACTGTTGCACCGTGTTGCAGTAACATTGCACTTACGTGTCTGTGGGTGCTGACGCTAACCCTGTACTGTCAGCACTGAGCAGCGCTGAGCTGTGGCTTAGCCCAGGCTATCCTCAGAGTTCCCTGTGGGTTGTTTAAACACCCAGGCGCCTTCATCCTGAGGCAGGTGATGGGAAGGGGGGAGCAGCTGGGTTCGGGGCTTCTGCTGTGTGCAGGGATCCAAAGACACCAGCAGAACGCCAGTGCCAGGTGTTGTCAGGCTCCAGTGCCTCAGATGTGTCCTCCTAGAGCTGTTGGAGAAGGGCTGTCCCCCTGCTTGTCCTGGCTCCTGTCTGACTGGTGAAGGACACCATGGGTGGGATGGGGCAGGTATTGTGGCGCACAACTTTAGCACCCAAGAGGCAGAGGCAGGCAGATCCTTGAGTTTGAGGCCAGTTTTGTCTACAGAGTGAGTTGTAGGAGAGCCAGGACGACATAGAGAGAGAGAGACCCTCTGGGGTTGGGGCAGAGGGTGGGAGAGAGAAACGGGGATGGGAAGAGGACTTCGTATATTCATATCCCTGTTGGTCTTAGGCTCTGGCACTGCGAGGCCTGCAGGGTCTGCTGATCTCCTGGGGGCAGCTTCCCCTTCCCCAGGAGATGTGAGCGCCTGTGAGCCTGGTTTGCTGTTACACAGAAAGACCTCTTCCTGGTTGGACCCATAGTCCTGCACACCGGGGTCTGCTTGTTCACACACTCGCTCAGCCCGGCCACACAGAGCGGGGCAGCACCAGGTCCACATGTCACGTTTGAGCCTTGGTTTTTATCACCAACATTAGTGTCACCGCAGTACTGTGGTGTTGGAGCAGCCAAGCTCACTTGTTAGGACTCGAGGTGTGTGGCGAGCACTCCAGTGACTGGGCCATCTCCTCGGCCATTTTGTTGTGTCTGTTTATCAAGAGAGGGCCCACTCTGTAGCCAAGGCTGGCCTTGAACTCTGTTTCCACCTCCCAAGTCCTGCCATCTTCCAAGCCTTTGATGTCTGTTATCAGCAAGTGACAAAATGAACATATGTCACAGTCAAGTACGGCTGAGTTTTCCAACACATCACGGCGGCTCCATCCACGAGTGCCCCACTTGTCCACCCATCTCCAGCGAGATGCAGGAACACAGCATAGCAACACTGATGGCTTTGGGGCTGGAGTTGGAGGATGCTCGGTTCCCTCCTGGGATGTTCACGGTTATATCTTATAACAAGTGTGCATCATTTTTATAGAAACTATAAAATCCTTACTTGAAGGGAACTCACCGTGTTGAGTAGTGTTTCCATATCCTCTGTAAATTACAGGCCAGTTGTAATTTCTAATCCCCTGTGGATACCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050052:ENSRNOT00000072509:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.286
Domain overlap (PFAM):
C1:
PF067478=CHCH=WD(100=92.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]