GgaALTD0001672-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000004378 | ASB6
Description
ankyrin repeat and SOCS box protein 6 [Source:RefSeq peptide;Acc:NP_001025859]
Coordinates
chr17:5648985-5649657:-
Coord C1 exon
chr17:5649549-5649657
Coord A exon
chr17:5649527-5649548
Coord C2 exon
chr17:5648985-5649083
Length
22 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
ATTGTCTTTTCCTACTGCAGGAA
3' ss Score
10.43
Exon sequences
Seq C1 exon
ATCCATGAGAGCAGTCCCCTTGATCTGGCCAGTGAGGAGCCCGAGCGGCTGCCATGCCTCCAGAGGCTGCTTCAGCTTGGGGCCGATGTCAACGCAGCTGACAAAACTG
Seq A exon
GTTTGTGGGGTGCTTCCAGCAG
Seq C2 exon
GAAAGACAGCGTTGTTGCACGCCTTGTTGCATTGTTATTGCAGCAGTGATGTCGTCCAGATCCACAACACAGAGAGCATCCGTCTCCTGCTGGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004378-8-6,9-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(46.2=100)
A:
NA
C2:
PF127962=Ank_2=FE(42.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGATCTGGCCAGTGAGGA
R:
CGTGCAACAACGCTGTCTTTC
Band lengths:
113-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]