GgaALTD0001672-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000004378 | ASB6
Description
ankyrin repeat and SOCS box protein 6 [Source:RefSeq peptide;Acc:NP_001025859]
Coordinates
chr17:5648985-5649657:-
Coord C1 exon
chr17:5649549-5649657
Coord A exon
NA
Coord C2 exon
chr17:5648985-5649083
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTTTGT
5' ss Score
4.29
3' ss Seq
ATTGTCTTTTCCTACTGCAGGAA
3' ss Score
10.43
Exon sequences
Seq C1 exon
ATCCATGAGAGCAGTCCCCTTGATCTGGCCAGTGAGGAGCCCGAGCGGCTGCCATGCCTCCAGAGGCTGCTTCAGCTTGGGGCCGATGTCAACGCAGCTGACAAAACTG
Seq A exon
NA
Seq C2 exon
GAAAGACAGCGTTGTTGCACGCCTTGTTGCATTGTTATTGCAGCAGTGATGTCGTCCAGATCCACAACACAGAGAGCATCCGTCTCCTGCTGGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004378-8-6,9-6-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(46.2=100)
A:
NA
C2:
PF127962=Ank_2=FE(42.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGATCTGGCCAGTGAGGA
R:
CGTGCAACAACGCTGTCTTTC
Band lengths:
113-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]