MmuALTD1025535-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000039483 | Asb6
Description
ankyrin repeat and SOCS box-containing 6 [Source:MGI Symbol;Acc:MGI:1919573]
Coordinates
chr2:30824641-30825560:-
Coord C1 exon
chr2:30825452-30825560
Coord A exon
NA
Coord C2 exon
chr2:30824641-30824727
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CACCTCCCTCCTCTTTGTAGGGA
3' ss Score
10.29
Exon sequences
Seq C1 exon
ATCCATGAGAGCAGCCCCTTGGATCTGGCCAGCGAGGAACCCGAACGCCTGCCCTGCCTGCAGCGCCTCTTGGATCTTGGAGCAGATGTCAATGCAGCTGACAAGAATG
Seq A exon
NA
Seq C2 exon
GGAAGACAGCTTTACTTCACGCCCTGGCCAGCAGCGATGGTGTGCAGATCCACAACACAGAAAACATCCGGCTCCTCCTGGAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039483-11-7,12-7-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(41.9=100)
A:
NA
C2:
PF127962=Ank_2=FE(33.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCATGAGAGCAGCCCCTT
R:
CAGGGCGTGAAGTAAAGCTGT
Band lengths:
135-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types