GgaALTD0002080-1/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000005364 | ZNHIT3
Description
NA
Coordinates
chr19:8079189-8083540:+
Coord C1 exon
chr19:8079189-8079375
Coord A exon
NA
Coord C2 exon
chr19:8083447-8083540
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGAGTGAGC
5' ss Score
5.16
3' ss Seq
TTGTTTTACTTTGTTTGCAGATT
3' ss Score
10.04
Exon sequences
Seq C1 exon
GAGAATCGGAAGAACTGAGAGGCTTGCTGCTGAACCCACACCTCAGGCAGCTGCTGCTGACCATTGACCAAGCAGAAGACAAAAGCTCTCTCATGAAAAAATACATGCAGGAGCCACTCTTTGTGGAGTTTGCAGACTGCTGCTTGAGGATTGTGGAACCCCCAGAGAAGGAGAACGTTATTCCCGA
Seq A exon
NA
Seq C2 exon
ATTATAACCTACTGAAGATAAAAAGGAGTACTAACCTATCACAACGAAGCATTCCAACTAATGGGTTTATAATAAAGGCAGAAAGATATGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005364-3-4,4-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF102744=ParcG=PD(68.4=84.4)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTGCTTGAGGATTGTGG
R:
AGTTGGAATGCTTCGTTGTGA
Band lengths:
111-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]