GgaEX0027786 @ galGal3
Exon Skipping
Gene
ENSGALG00000005374 | MYO19
Description
NA
Coordinates
chr19:8082393-8084381:-
Coord C1 exon
chr19:8084272-8084381
Coord A exon
chr19:8083780-8083888
Coord C2 exon
chr19:8082393-8082556
Length
109 bp
Sequences
Splice sites
3' ss Seq
CAAACACACTGACCTTCTAGCTT
3' ss Score
4.61
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GATCTCTTTTCAAAGTTTCACCGATCGCTATGAAATACTGAGAAAGTCACGTAGGTCCAGCAAAAACAATGCATGTGATAAAAGCAACTACCATACTGCCAAGAAGAAAG
Seq A exon
CTTGCCTGGATTCTGCTGCTTCTTCTGCCTATTACAAACTTCTGTATGCAATTCTTTTTTCTAAACAAGAGCGAGGATGGACATTAAAATACATAATCCAGTCTACCAG
Seq C2 exon
GTGAGACTGCAGCGGTGGATGACAACAAAGCATCACGTTCTGTCATCGCTGAGATCCTGCAGAATGTTGTTACAGGACAAAGTGCTGCTGAGCCCACAGGGAAGGGATCAGAGAATACTTCAGTGTATTGTGGCAAAACCAAAGTATTTATGGCTAATTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=0.000 C2=0.066
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.0=100)
A:
PF0006316=Myosin_head=PD(3.6=64.9)
C2:
PF0006316=Myosin_head=PD(7.3=92.7)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAAGTTTCACCGATCGCT
R:
TGGTTTTGCCACAATACACTGA
Band lengths:
243-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]