GgaALTD0002159-1/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000005550 | ST6GAL1
Description
beta-galactoside alpha-2,6-sialyltransferase 1 [Source:RefSeq peptide;Acc:NP_990572]
Coordinates
chr9:4744140-4751064:+
Coord C1 exon
chr9:4744140-4744240
Coord A exon
NA
Coord C2 exon
chr9:4750907-4751064
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
3' ss Seq
CTCCTTAATTTCTTTCCTAGGCC
3' ss Score
9.59
Exon sequences
Seq C1 exon
GGTGCGTTCTCGGCGATGCTTCTCCCTGGCGCGTCCTTCCGAGGCCGCGCTATCGATGAGGCGCGGAGGAGAGGGACAAAGGAGAAGTGCCGCGCTCGGTG
Seq A exon
NA
Seq C2 exon
GCCAGCAAGCTCGATTAGAAGTGAGATGAGGGCATGAAGAGCTGCTTGCATGGCACAGATGTGGCAGTGGCTCATCTGGATGTCACCTGGCCACCCCCTTGTGACTGGAAGAGTTTGACAGGAGCTGCTGAGGACAGCGAAGGATCCTGGAGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005550-7-1,8-1,9-1-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGACAAAGGAGAAGTGCC
R:
GATGAGCCACTGCCACATCTG
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]