GgaEX0007745 @ galGal4
Exon Skipping
Gene
ENSGALG00000005550 | ST6GAL1
Description
beta-galactoside alpha-2,6-sialyltransferase 1 [Source:RefSeq peptide;Acc:NP_990572]
Coordinates
chr9:4742676-4751064:+
Coord C1 exon
chr9:4742676-4743080
Coord A exon
chr9:4749881-4750100
Coord C2 exon
chr9:4750907-4751064
Length
220 bp
Sequences
Splice sites
3' ss Seq
ACCAGGATTTCTTTTACCAGAAC
3' ss Score
5.64
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
TTGGGGTGGGAGGGTCTTCCGAACTCCCGTTTCCGTAGCTGCTTTCGCTGCCCTGAGGCCAGACCCTTCAGGAGAGGTTTCCTGCTGTTGCACGAAGTGCGGCCACCTGTGCAGGTCCACGCGGTGGCAGCTCGGTGTTCCTCGAGCTGTGAAAGCTTTGAACAAAGGAATTGAAGATAGGACTGAATATAAACAGGACTCGGGACCACCTCGATATGTCTCCCCAAGGAGTTCTCGAGGAAGGTTTTGGAGTTCGCTAAGAGCACGTTCCTCTTCCAGCAGGGCAGATAAAGGAGCGCCTGCTCCCCCGCGGTCACCCTGCCATTGCTGCGCTGCTGCGGCGCGGGAGGACGGCCCCAACAAAGGGCTGGCACGGCTTTGTTCCGCTAAGGCGCGCGGCACAAG
Seq A exon
AACACAGTGGAGTGTTTTCCTCTGCCACAGCAGCCCTGGGGCACTCACTGAAGCTGAGGAAAGGTGGAGGAGGCATAATTTATGACCTATGGAAAGAAGAGTGAAAGAACTAATGAGAAATCATTCAGGTTGGAAAAGACTTGTAAGATCATCTAGTCCAACCTACCACCAGTGTCACCCGCTGACCATATCCCTCAGCGCCACATCCCTTGGCACAAAG
Seq C2 exon
GCCAGCAAGCTCGATTAGAAGTGAGATGAGGGCATGAAGAGCTGCTTGCATGGCACAGATGTGGCAGTGGCTCATCTGGATGTCACCTGGCCACCCCCTTGTGACTGGAAGAGTTTGACAGGAGCTGCTGAGGACAGCGAAGGATCCTGGAGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005550_MULTIEX1-1/4=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCGGGACCACCTCGATATG
R:
GACATCCAGATGAGCCACTGC
Band lengths:
292-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]