GgaALTD0002425-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000006139 | DIP2B
Description
NA
Coordinates
chrE22C19W28_E50C23:147330-148194:-
Coord C1 exon
chrE22C19W28_E50C23:148102-148194
Coord A exon
chrE22C19W28_E50C23:148084-148101
Coord C2 exon
chrE22C19W28_E50C23:147330-147453
Length
18 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACG
5' ss Score
10.19
3' ss Seq
CTCTTCCTCTCTTTCCTCAGGAT
3' ss Score
12.57
Exon sequences
Seq C1 exon
GTAGCCCTTGTGTACCCGAACAATGACCCAGTCATGTTTATGGTGGCATTTTACGGCTGTCTCCTAGCAGAAGTGATACCAGTGCCTATAGAG
Seq A exon
GTACCTCTTACCAGAAAG
Seq C2 exon
GATGCTGGTGGTCAGCAGATTGGTTTTCTTCTGGGAAGCTGTGGTATTGCTTTGGCCCTCACCACTGAAGTCTGTCTGAAAGGGCTTCCAAAAACCCAAAATGGAGAAATTGTGCAGTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139-11-15,12-15-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.8=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATTTTACGGCTGTCTCC
R:
AGGGCCAAAGCAATACCACAG
Band lengths:
109-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]