GgaINT0001063 @ galGal3
Intron Retention
Gene
ENSGALG00000006139 | DIP2B
Description
NA
Coordinates
chrE22C19W28_E50C23:147330-148194:-
Coord C1 exon
chrE22C19W28_E50C23:148084-148194
Coord A exon
chrE22C19W28_E50C23:147454-148083
Coord C2 exon
chrE22C19W28_E50C23:147330-147453
Length
630 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACG
5' ss Score
10.19
3' ss Seq
CTCTTCCTCTCTTTCCTCAGGAT
3' ss Score
12.57
Exon sequences
Seq C1 exon
GTAGCCCTTGTGTACCCGAACAATGACCCAGTCATGTTTATGGTGGCATTTTACGGCTGTCTCCTAGCAGAAGTGATACCAGTGCCTATAGAGGTACCTCTTACCAGAAAG
Seq A exon
GTAACGTTGATGGAACTTAGAGGAGTAATAGGCAGATGTGGGATGAAAACCAAGTCAGACCACCAACCTCTGAAAGTGTTTCACAGCACAAAGCAGCTGCCTCAGCCGTTCTCTATTAACACAACACGTGAGACCATTATGAACATGCAGTAGGAGTTTGAAAACATGGAAAAACGTATTGACCAGAAAGCTGTGCTGAGCAGCTGCAAGTGGTCCATTTGCCTCAATGCTGTAGTTTGGACTACAGTAGCATTGGCTACTATTATTGCAAATAATTCATTTGGTATGATAATATTGTATATCTGCCTTCTGACCAATGTGATGGGGTCTCATTTCAAGCTGTGCTTCACATCTGCCAGTCTTTAGATTTTTGCTGGAGGTTGAAGATGTGAAGTATTTTGTGAATACTCAACAAAAGCATTTTCTTTACCCTTACCAGAATTTTTGCTATGTTGCCATATTACTTTACATTGAAAGCTGTCTGAAACTAAAGAATTTAGTAAGACGAAACCAAGAATAATGGCAAATTTCCAGAGCATTACCAATCTTTGGAATATGGTAAGGGAAAAGCTGACTAGTGTCATCTTTGAACAAGAATGACTCTTCCCTCCTCTTCCTCTCTTTCCTCAG
Seq C2 exon
GATGCTGGTGGTCAGCAGATTGGTTTTCTTCTGGGAAGCTGTGGTATTGCTTTGGCCCTCACCACTGAAGTCTGTCTGAAAGGGCTTCCAAAAACCCAAAATGGAGAAATTGTGCAGTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139:ENSGALT00000009909:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.8=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGCCCTTGTGTACCCGAAC
R:
AACTGCACAATTTCTCCATTTTGGG
Band lengths:
230-860
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]