BtaINT0049304 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005246 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr5:29404105-29405899:-
Coord C1 exon
chr5:29405789-29405899
Coord A exon
chr5:29404229-29405788
Coord C2 exon
chr5:29404105-29404228
Length
1560 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TCATTATCTTTTCTCCACAGGAT
3' ss Score
12.39
Exon sequences
Seq C1 exon
GTAGCCCTGGTTTACCCCAACAATGATCCGGTCATGTTTATGGTGGCCTTTTACGGTTGTCTCCTGGCAGAAGTGATTCCAGTGCCCATAGAGGTACCTCTTACCAGAAAG
Seq A exon
GTAATGCTGCTTGATTTAAGAGGAATGTAGCCTGATGTAACATGGCAGGCATCGAGGTTCTTGGATCAGTTGACTCAGTTACAACACTAAAAGGGGATTCCCTGGCTGCTCAAACAGTCAGGAATCTGCCTGCAATGCAGGAGACCTGGGTTCAGCCCCTGGGTTGGGAAGATTCTGTGGAGGAGGGCATGGCAACCTACCCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGTGGGCTACAGTCCATGGGGTCCCAAAGAGTCAGATATGACTGAGCGTCTAAGGACACACCACAGAACACTTAAAACAGTCTGACCATTTTCCTAAGTACTTAACTTCACTTTCTAGAAACAGGGAAGTTGTAGAAAATTTATTTATGAATATTTTCAAGTTTCATGAAAATAACCTGTTTCCAACTAAGATAGAATTTTTATAGTATATATATATATACCACTTAAAAATTATGGGGACATACTTGACTTTTCAACAATTAGCTTTTATAGAGAGTCCCACTCTTGCTTCAGAGACTGTAAGTAATCCACATTTATAGTAGGTGGAATCTTTCTATACGAGCATTTTCCTTAACATCTAAGATTTCTATTAAGTCCAAGTGTGATGCAGTGATGTTGTGTTACTACTCTGGGATATAGAATTTACTTTGGCAACACATCAGCCCTACTAAAATGAAGCATATGTAGCAAATGTCAAAGTTTTACCAAGTGATTTCTCCATGAGCTGTTTGACTTTAATTTTCTCATGCAGTTTATTATTGAGAGTTGATGGTAAAGACAAATATGGTGGAAACTGTAGATTTACAAGAAAAGAATTTTTTTTCTGAAAGGAATAAAAAACAAAATGAGTAGCATCCCTGAAACTCTGGTTGATAGAAGAAAATATCTTTAGATTGGTCAGGAAATCATAGGGTTGTTCTTAAATTATTAAGTTGGCAGTGTTTATGTGGTTTCATAATGATACTTTTAAGATGACATTTTAATGGAAATGCTTTAGGCTGTATCTTTTGGTTTTATTTCTCTACTGCTGTTGTAAGGCTTAAATCTACCTCCTTTAAAATAGAATAAGAAGAAGTATATGAACTTGGGTATAATTGTCCATTTACTTTCATTGTAAATTTGGACATTTGGTGTCCATTTACATTATTTATTTTGTTCTGACCTGAATTGCTTTCTTTTTGGATTTGAGGTTATGGCTAGGTCAGGACAACTTAACCATGTTCACTTTTATTTCATTTCCTGAGATTAATTTAGAAGAGGAGCATTGCTGACCTTTGAGTAAAATGGCCACATTTGGCTGGTGGAATTCATCGTTAGCAGCGTCAGATTAATGAAACATGGTTTGCACTCAGGAAATCATTGTGCTGTAGCAGTTATTTGGAAGAACATATTGTCACTAGATTTTGACAGTTGCCAGATATCAGGGGGATTTCATGAATGTATTGCGCAAGTGCCAGAGCATTACTAAGTGTCAGATTTTGGGCTTGGGTATGCTCATGTTCGCTCCCCTACCATGTTCATTATCTTTTCTCCACAG
Seq C2 exon
GATGCTGGGGGGCAGCAGATTGGCTTCTTGCTAGGAAGCTGTGGTATTGCCTTAGCTCTTACCAGTGAGGTTTGTCTAAAGGGATTGCCAAAAACTCAGAATGGAGAAATCGTACAATTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005246:ENSBTAT00000006902:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGCCCTGGTTTACCCCAAC
R:
AATTGTACGATTTCTCCATTCTGAGT
Band lengths:
230-1790
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]