RnoINT0047732 @ rn6
Intron Retention
Gene
ENSRNOG00000056106 | Dip2b
Description
disco-interacting protein 2 homolog B [Source:RGD Symbol;Acc:1305671]
Coordinates
chr7:141825734-141827423:+
Coord C1 exon
chr7:141825734-141825844
Coord A exon
chr7:141825845-141827299
Coord C2 exon
chr7:141827300-141827423
Length
1455 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TCATTATTTATTCTCCACAGGAT
3' ss Score
10.86
Exon sequences
Seq C1 exon
GTTGCCCTGGTTTACCCCAACAATGATCCTGTCATGTTTATGGTGGCTTTTTATGGATGTCTTCTGGCAGAAGTGATTCCAGTACCCATAGAAGTACCCCTGACCAGAAAG
Seq A exon
GTAACTTCGCTGTGTTAAATGTCCTTCCCTGTGACACAGTAGGTCCTGCACTGACTCAGTGACAGTAGAAACAATGTTGTCAGGTGGTGGAGGTGCACATATCTTATTTTATATAATATACTCAATGTAGTTCACCTATGAAAGAACTTTCATAGAATTGTTCCTCACTTTAAAAATAGCGAGAGGCATGCATTTGAGTGTTCAGTGTTTGGTTACCATCATAGAGTGTCGCTCCTTTAGACTTACTTTATCAAGGGATTTCTTTAACCGGTCCACATAACCCAGACTCGCTGAGTGGGAGGACGGTGCAGTAGTGCTGATGGCTCTGCTGGAGAATTGTGCTTGGACATTCAGTGCAGATAGTAAGCTCACAGCACAGGGTTCCACTCGAGGGTGAATGGCTTCTCTTGAGCTGTTTCATGTTTATTACTGAGAATCGGGGTTAAAGACCAATATGGTGGATAATGTTGGTTGATTGATTGATTGATTTTAATAGTTTTTTTCCACTTGGAGCGGTTTAATGAGAGAAGAGTAGCAGAGGGGAGGAAAAAAGGAGGCCAGCCATGAGCATGTGGAGGGAAGGGGGAATAGAGAGAAGGGACTGGGAAGGGGACAAGAGCAGAGCAGAGAAGTACAAAGAGCTGATTTTAATATGTATTTACTTATTTAATGTATGTGAGTACACTCTTGCAGTCTTCAGACACAGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCATGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCACCTCTCCAGCCTCCGAAAATGTCGGTTTATATGAAGGGATTGTTTTAAGTAATAAGAAAGAAATGAGTGACATTGCTGCTGCTTTAGCTGATGGGGTAGAACATCCATATTATAGGAAAGCACGTCAAGTTCTCTTTATGTCGACTGTACTCAGCTTCCTTACAGTACTTTGAAGGATTGAACATAAATGCTCCAGACTTTGTCTTAGGTTGCTTTTGCTGCTGCTTAAGGCTCAAGTCTATTTCCTTTAAAATAGAGTGGCGGAGCATACAGATTTAGCGTAACTGGCTTTGATGTCCATCTTATTTATGTTGTTCTCGCTTGGCTTGCCTTGCTCTTAGATCTGGGGTAGGACTAGAAGACAACCGTGTTAGAATTTGTTTCACTTGCCTAGAGGAGTCAGAGAAGGTCACACTGGCTAGTAGAGTGCATGCTTCACACTGTCAGCTCAGCAGCGTTTGCGTGTACTTACACCTTTGTAGGATTTGTTTGGAGCCATGTTGTCCTGAGCTGGGACATTTGCCAGCTGTCCGGCTCCGTGGCACAGTGGGTAGTGCTGGAGCATCTCTGGGTGCTGGTTCAAAGCCTGGCGTGCTCACATTCACTCTCTCTCACACCCTGACTGTGCTCATTATTTATTCTCCACAG
Seq C2 exon
GATGCCGGAGGTCAGCAGATTGGCTTCTTGCTAGGGAGCTGTGGGATTGCCTTAGCTCTCACCAGTGAAATTTGTCTGAAGGGCCTGCCAAAAACCCAGAATGGAGAAATCGTACAGTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056106:ENSRNOT00000086577:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCCCTGGTTTACCCCAAC
R:
AACTGTACGATTTCTCCATTCTGGG
Band lengths:
230-1685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]