MmuINT1008618 @ mm10
Intron Retention
Gene
ENSMUSG00000023026 | Dip2b
Description
disco interacting protein 2 homolog B [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:100160442-100162101:+
Coord C1 exon
chr15:100160442-100160552
Coord A exon
chr15:100160553-100161977
Coord C2 exon
chr15:100161978-100162101
Length
1425 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TTATTTTTTTTTCTCCACAGGAT
3' ss Score
13.32
Exon sequences
Seq C1 exon
GTTGCCCTGGTTTACCCCAACAATGACCCTGTCATGTTTATGGTGGCTTTTTATGGATGTCTCCTGGCAGAAGTGATTCCAGTACCCATAGAAGTACCCCTGACCAGAAAG
Seq A exon
GTAAGTGAGCTGTGTTAGCTGTCCTTCCCTGTGACATAGTAGGTCCTGCGCTGACTCAAGTGACAGTAGAAGCAATATTATTGCAGGTGGTGGTGGTGCATGCATCTTATTTTATATAATATACTCAACTTTACTTTCCGAACCTATGAACGTTATCAAAGATTATGTATATGTGAGTGTCATGCAGATAATGTATTTCATCTATGGAAGAATTTTTATAACATTGTTTCTCATTTTAAAATTTGTGGGAGGCATATACTTGAGTGTGCAGTTGTTACCATTCATAGAGTACCATTCCTTCAGAACTTGCTTTATCAAGGGATTTCTCTAAAGGGGTCGCATAACCCAGAGCAGGCAGCTTGGGAGGATGATGCGGTGGTGCTCGGTGGCTCTGCCAGGAGAATTGTGCTTGGACCTCTTCAGCACACACAGTGAGGTCATAGCACGAGGTTCCAATCTGGGTGGATGGTTCCTGCTTGGACCATGTCAGCCACAACAGTAAGGTCACAGCACAGTTCCACCTTAGGGTAAATGGCTTCTCCTGAGCTCTTCACACTGGCTGTTGCATGCTGTTTATTACTGGGAATTGGTGTTAGAGACCAATATGGTGGAGAATGTTGATTGATTAATTGATTTTAATATTTATTTACTTATTTAATGTACATGAGTACACTATAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCGTGTGATTGCTGGGAATTGAACTCAGGACTTCTGGAAAAGTAGTCAGTGCTCTTAACTGCTGAGCCATCTCTCCAGCCCCTGAGAATGTTGCTTTATATGAAAGCATTGTTGTAAATAATAAGAAAGAATTGGTGACGTTGCTGATGTTTTAGCTGATGGGGTAGAGCATCTGTATTACAGGAAAGCTCAGCTCTCCTTAGGTTGACTAATCCTAACAGTACTTTGCAGGATTGCACATAAATACTTCAGAGTTTATCTTTGGTTGCTTTTGCTGCTGCTTAAGACTAAAATCTATTTCCTTTAAAAGAACATGCAGATTTGGTGTAATTGTCTGGAAATATGGGCTTTGCTATCCATTTGCATTTTGTCTCTGTTCTGGCCTGACTTGCCTTGCTCTCTTGACTAGGAGAAGGAAACCATATCACGATTCGTTTCAGGTGCCTAGAGAGAGCATCAGAGATGGTCACATTGGCTAGTAGGGTGCACGGTGAACAATGTCAGCTTAAACCAGTGTTTGGTTGGACTTAAACATTGTAGAAATTGTTTGGAGCCTGTTGTCCTGAGCTGTGCCATTTGGCACAGTGGGTAGTGCTGGAGCATCTCTGGGTGTGGGTTCAAAGCCTGGTGTGCTCACATTCACTCACGATCACACCCTGACTGTGCTCATTATTTTTTTTTCTCCACAG
Seq C2 exon
GATGCCGGAGGTCAGCAGATTGGCTTCTTGCTAGGGAGCTGTGGGATTGCCTTAGCTCTCACCAGTGAAATTTGTCTGAAAGGCCTGCCAAAAACCCAGAATGGAGAAATTGTACAGTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026:ENSMUST00000100203:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCCCTGGTTTACCCCAAC
R:
AACTGTACAATTTCTCCATTCTGGGT
Band lengths:
230-1655
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types