GgaALTD0002446-3/3 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000006188 | CCBL2
Description
NA
Coordinates
chr8:15830315-15831792:+
Coord C1 exon
chr8:15830315-15830415
Coord A exon
chr8:15830416-15830492
Coord C2 exon
chr8:15831748-15831792
Length
77 bp
Sequences
Splice sites
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
3' ss Seq
GGTATCAATTTTTACTTCAGGTG
3' ss Score
6.36
Exon sequences
Seq C1 exon
CAGGCCTGAGAGGGCGCCTGAAGGCTCCTCCCCGAGCGGCTTGTTGGGCCTCTGCGCTGCCGGGGTCCGAGGCGGCAGGCCGGGCGGGAGTGAGGCCGTCG
Seq A exon
GTGAGGCGGGGGGGGTGGCTGGTGCCTTTCCAGCTGCGAGCTTGGGGTGCTTCACGTTGAGAGTATTGCTTTGGTAG
Seq C2 exon
GTGTTTCATGTACCTTCAGAGATTGACCACACTGCAGTGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006188-1-1,2-1,3-1-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGAGGGCGCCTGAAGG
R:
TCACTGCAGTGTGGTCAATCT
Band lengths:
136-213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]