GgaEX0008803 @ galGal3
Exon Skipping
Gene
ENSGALG00000006188 | CCBL2
Description
NA
Coordinates
chr8:15829830-15832020:+
Coord C1 exon
chr8:15829830-15830415
Coord A exon
chr8:15831748-15831792
Coord C2 exon
chr8:15831945-15832020
Length
45 bp
Sequences
Splice sites
3' ss Seq
GGTATCAATTTTTACTTCAGGTG
3' ss Score
6.36
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GTCCCGCTCCCCGGAGGCTGTGGGGCACCTGGTGGAGGCGCTGCCGCCGTCCTCCCGCTCTCGTGTGGCGCTGGGCCGCACCTAGCTCGGCCCGCGCGGATCTGTGCTCCCTTCGGCCGCTCACGGCCCGCACTGAGGCCTGCCTTGGGCTGCTGGTGAGCTCTCCGAACCACGCAGCCGCCATTTCCCTCAGAGGCGCCGGCGAGGCCACACGGGGCAGTGGGGCTTTTCCCATCCCCTCAGGCTGCCCGGCTGCGCCCTCCCGGCTCCTCCCGTTGGGCGGGAGCGCAGCAGTGGCGGGGCGGGCGGGGCGGCCGCGCTGGCTGGCTGCCGCGCAGCGGGGGAGGGTCCCGGGCCGCCGGAGGTGCGACATGACGCTTCCTCACAGCACCTGCGCGCCAGGCCTGAGAGGGCGCCTGAAGGCTCCTCCCCGAGCGGCTTGTTGGGCCTCTGCGCTGCCGGGGTCCGAGGCGGCAGGCCGGGCGGGAGTGAGGCCGTCG
Seq A exon
GTGTTTCATGTACCTTCAGAGATTGACCACACTGCAGTGATACAG
Seq C2 exon
GTTGCAAGTTAACTTTGCATGTTGAGTTTGGAAAGTTTTTATATCATCATGCTACTCCTCAGTATAAACTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006188_MULTIEX1-2/3=C1-3
Average complexity
ME(1-2[100=87])
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTCCTCACAGCACCTG
R:
AACATGCAAAGTTAACTTGCAAC
Band lengths:
148-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]