GgaALTD0002728-1/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000006929 | ZNF711
Description
NA
Coordinates
chr4:8745004-8746786:-
Coord C1 exon
chr4:8746751-8746786
Coord A exon
NA
Coord C2 exon
chr4:8745004-8746178
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTAATG
5' ss Score
6.53
3' ss Seq
TTTTGTGTGTTCAAAAACAGCTG
3' ss Score
6.8
Exon sequences
Seq C1 exon
GGAATAACTTGGATACACGATTAGAAAACAAAAACG
Seq A exon
NA
Seq C2 exon
CTGTTATAATAGGTCCTGATGGACAGCCCTTAACAGTTTACCCTTGTCATATATGTGGGAAAAAATTTAAATCCAGAGGATTCTTGAAAAGGCATATGAAGAATCATCCAGATCATATGATTAAGAAGAAATACCAGTGTACAGACTGTGACTTTACAACTAACAAAAAAGTAAGTTTCCACAATCATCTGGAAAGCCATAAACTTATAAATAAAGTTGATAAAACCCACGAGTTTACGGAATATACAAGAAGATACAGAGAAGCAAGCCCGTTGAGTTCTAATAAACTAATACTGAGGGACAAAGAGCCTAAACTGCACAAGTGCAAATATTGTGACTATGAAACCGCAGAGCAGGGGCTACTCAATAGACATCTACTTGCAGTTCACAGTAAGAACTTCCCTCACGTATGTGTGGAGTGTGGGAAAGGATTCCGTCATCCGTCAGAGCTGAAAAAGCATATGAGGACCCACACTGGGGAAAAGCCATACCAGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006929-13-13,14-13-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.597 A=NA C2=0.151
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=5.9),PF139091=zf-H2C2_5=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.9)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATACACGATTAGAAAACAAAAACG
R:
CCGTAAACTCGTGGGTTTTATCA
Band lengths:
266-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]