GgaINT0070520 @ galGal3
Intron Retention
Gene
ENSGALG00000006929 | ZNF711
Description
NA
Coordinates
chr4:8745004-8746786:-
Coord C1 exon
chr4:8746643-8746786
Coord A exon
chr4:8746179-8746642
Coord C2 exon
chr4:8745004-8746178
Length
464 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TTTTGTGTGTTCAAAAACAGCTG
3' ss Score
6.8
Exon sequences
Seq C1 exon
GGAATAACTTGGATACACGATTAGAAAACAAAAACGGTAATGCAACACAATACCTGCAGATTTGTGATAGCATTAGCACTAATAGAGTGCTAAAACAAAAAACCAAGAAAAGGAGGAGAGGAGAGGCCAGGCAATGGCAAACAG
Seq A exon
GTAAACACTGTATGGTTATGTGTGCTCTCACAGAGTGGCACTTACTCCTTTACTATTCTTCTTTTTTTTTCTTTTTTTTTCCAAACTGGTTCAGAATTAAAAATCTAAGTGGTGATTTGCGGATTTCCTGTGTCCTTCCCCCTCCAATTCTGTGCATAGAGAATGTGGTAGGTTTTGCTACTGAAGTTAGCAACTTAGCATTGGTGTAATCCGTTTGAATGTTGCGAGTGATTAAAAAGTAATTGTGGACGTACTCACTGTACATGTGATATCACTTACCTATCTGAGCAGTTTCTAAAGCAAAACTATATAAACTGTAGGTGCTGTGCATTGGTTGTTTTTAAACTACTGATCTCTTGCTGCAAGTGTAAGTGCATGAATCTGAACAGCAGTTGGCTGATTTAAAACTTCTTAATCAGTAAACTTGTTTCCTTCATAACTTGTTTTTGTGTGTTCAAAAACAG
Seq C2 exon
CTGTTATAATAGGTCCTGATGGACAGCCCTTAACAGTTTACCCTTGTCATATATGTGGGAAAAAATTTAAATCCAGAGGATTCTTGAAAAGGCATATGAAGAATCATCCAGATCATATGATTAAGAAGAAATACCAGTGTACAGACTGTGACTTTACAACTAACAAAAAAGTAAGTTTCCACAATCATCTGGAAAGCCATAAACTTATAAATAAAGTTGATAAAACCCACGAGTTTACGGAATATACAAGAAGATACAGAGAAGCAAGCCCGTTGAGTTCTAATAAACTAATACTGAGGGACAAAGAGCCTAAACTGCACAAGTGCAAATATTGTGACTATGAAACCGCAGAGCAGGGGCTACTCAATAGACATCTACTTGCAGTTCACAGTAAGAACTTCCCTCACGTATGTGTGGAGTGTGGGAAAGGATTCCGTCATCCGTCAGAGCTGAAAAAGCATATGAGGACCCACACTGGGGAAAAGCCATACCAGTGTCAGCACTGTGTCTTCAGGTGTGCTGATCAGTCCAATCTGAAAACTCATATCAAAACCAAACACGGGAATGACTTGCCATTTAAATGTGAGCACTGTCCCCAGGCTTTTACAGATGAAAAGGAGCTGCAGCAGCACACGGAATTGTTTCAAGGGCATAAGACTCATCAGTGTCCACACTGTGACCATAAGAGCACCAACTCCAGTGACCTGAAGCGACACATTATTTCAGTTCATACAAAGGATTTTCCCCACAAATGCGAGGTATGTGAAAAAGGCTTCCATCGTCCATCAGAGCTCAAAAAGCATAGTGAAACCCATAAAGGTAAAAAGATACATCAGTGTAGACACTGTGACTTTAAAACGTCAGATCCTTTTATACTGAGCGGGCACATCCTCTCGGTTCACACCAAGGACCTGCCTTTTAAATGCAAAAGATGTAAAAGAGGATTTAGGCAGCAAACTGAACTTAAGAAGCACATGAAGACCCACAGTGGAAGAAAAGTTTATCAATGCCAGTATTGCGAATATAGCACTACGGATGCGTCAGGCTTTAAACGACACGTAATATCAATACACACAAAAGACTATCCACATAGGTGTGAGTATTGCAAAAAGGGATTCCGTAGACCATCAGAAAAAAATCAGCATATAATGAGGCACCACAGAGAGGCCATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006929:ENSGALT00000011226:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.606 A=NA C2=0.151
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=PD(85.2=93.9)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=5.9),PF139091=zf-H2C2_5=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGGAGGAGAGGAGAGGCC
R:
TGCAGTTTAGGCTCTTTGTCCC
Band lengths:
356-820
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]