RnoINT0168626 @ rn6
Intron Retention
Gene
ENSRNOG00000022391 | Zfp711
Description
zinc finger protein 711 [Source:RGD Symbol;Acc:1562768]
Coordinates
chrX:84092533-84096617:+
Coord C1 exon
chrX:84092533-84092676
Coord A exon
chrX:84092677-84093349
Coord C2 exon
chrX:84093350-84096617
Length
673 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCCTTTTTTCCTTCTTCCAGCTG
3' ss Score
12.08
Exon sequences
Seq C1 exon
GAAACACTTTTGACTCTGCATTAGAAAACCGAAGCACGACAGCAGCGCAGTACCTTCAAATTTGTGATAGCATGAACACAAATAAAGTACTGAAACAAAAAATCAAGAAGAGGCGGAGGGGAGAAACAAGGCAGTGGCAAACAG
Seq A exon
GTAAGATAGTTCTGTTTTATAAATATTACAATAAATTTATATGCAATTTTATCTAATACAAGGAGGAAAAAAATCAATGTTTTCATTGCAGTTACACACCCATGTAACCCTGTATACTATATATATATATATATATATATATATATATAATTACATATATATTACGATTTATTTTAAGTCACATTGTGTGTGTGTGTGTGTGCATGTGCGTGCGTGCGTGCGTGTGTGCGTGCGTGTGTGTGTTGTGAGCTGCTTGACATTGGTGCTGAGAACCAAACAGATACTTTGCTAGAGCATCAAGTATTTCTAATCACCAAGTTATTCTCCAGATCTGATAATTATATTTAACAGTATATGATTGCGACTTTTAAAAGCATATTTTTCCTAATTCAAAAGGTATTTTAAAGACAATTTTCAGATGGTTTAAATCATAAATATTCTTGATTCTTTTTATATTTCATGCCATAGATGAGTAGTCTAAAGTAGAGAGCCACTTACTCCTTGGTAAACAACTTTACTAGAAATATTTTATAGTATGCATTTTTATTATATAGGCTTTTATTCAACTAGTATTTTCACATAGTGAATTTTAGCTAGTTTCAAGAAACTGTTTTACACATTTTTTTAAAGAAGTGTGATAAAATGTCACAATTTCCTTTTTTCCTTCTTCCAG
Seq C2 exon
CTGTTATAATAGGTCCTGATGGACAGCCCTTGACAGTATACCCTTGCCATATTTGCACAAAAAAGTTTAAATCCAGGGGATTCTTAAAAAGACACATGAAAAATCATCCCGATCATTTGATGAGAAAGAAGTATCAGTGTACAGATTGTGACTTTACAACTAACAAGAAAGTGAGTTTCCATAACCACTTAGAAAGCCATAAGCTCATAAACAAAGTTGATAAAACCCATGAATTTACAGAATACACTCGAAGATACAGAGAAGCTAGTCCTCTGAGTTCAAATAAACTCATTTTAAGAGACAAGGAACCGAAGATGCACAAGTGCAAGTACTGTGATTATGAAACTGCTGAACAAGGACTGTTAAATAGACATTTGCTGGCTGTTCATAGCAAGAGTTTTCCTCATGTTTGTGTTGAGTGTGGAAAGGGTTTTCGTCATCCTTCTGAACTCAAGAAACATATGAGAACCCATACCGGTGAGAAGCCATATCAGTGTCAGTATTGTGTGTTCAGGTGTGCCGATCAATCAAACCTGAAAACTCACATTAAATCTAAGCATGGTAACAACTTGCCATATAAATGTGAGCATTGTCCTCAATCATTTGGTGATGAGAGAGAGCTTCAACGCCATCTGGATTTGTTTCAAGGACATAAAACCCACCAATGTCCTCATTGTGATCATAAGAGCACCAACTCAAGTGACCTTAAGCGGCACATCATATCTGTCCATACCAAGGACTTTCCTCACAAATGTGAAGTCTGTGATAAAGGTTTTCATCGTCCTTCAGAGCTTAAAAAACATAGTGATATTCATAAAGGTAGGAAGATTCATCAGTGTAGGCACTGTGACTTTAAAACATCAGATCCATTTATTCTTAGTGGTCATATCCTTTCGGTTCATACTAAGGATCAGTCATTGAAGTGTAAAAGGTGCAAGAGAGGATTCAGGCAACAAAATGAGCTGAAAAAGCACATGAAGACTCATACTGGAAGGAAGATTTACCAATGTGAATATTGTGAATACAGCACCACAGACGCATCTGGCTTCAAACGACATGTGATTTCAATACATACGAAAGACTATCCACATAGGTGTGAGTTCTGCAAGAAGGGCTTCCGAAGGCCATCAGAAAAAAATCAGCATATAATGAGGCACCACAAGGAGACTCTTATATAGTAAGATTGATATAAAGAAAGAAATTATTTACAGAATAATATATACTATTTGGGAGTAAAATCTCTGTTTTATCTGGTTTCAAAGCTTGATATTAAATCATAAATTTACACTCTTTGTACTAAAGATCCTAAAATACTTGGACTAAAAGGCAATCTCAGAGCCCTTTGAAAATTACCTAAAGATTTTAAGACGTACCATAGGATGGTTACAGAGGACTTAACTGTATTTAACAGTATTATATGCATAACTCTACTACAGAGGGAGAAAGTTAAAACACCTTATTTGATTGGTCACACTAGAGATAAAGTGTTTCTGAAAGGAGGATACATAAATGATTTAGAAATGCATTGCTATAGCAAGCAGCCTCACTTTTATGCAATTTCAGAAATAGGGTGGGGAAAGAAAATGCAGTCATCCATCAGTCACTTAATCATTAAGCCTTTTATATTGTACCTGGACATTGGATTCCAGAAATGGCAAATGTTTTGTGTATTTGTTACAAGGAATCTTAATCTGAAAAAACAAGTTACATTGATTCAGTCCTAGTTAAAAAAGTAAAAAAAAACCTTCAGAGTTGTTGATATTTTATCACAGGATATGAAGCTTAAGACATAGCATTCTGTGCTGAAGTGAAATATAAGAAATAAAAAGTTCCAGTTTTGATGTTCAAGTAGATTCAGTATGGTATATATGATAAAAGTGTATTTGAGTCAAATGTGGCTTTCTGAAATGGATGCAAGTATGTTCAAAAGTCAATACTATGTTTCTTATAATCTAAATGTTAAATTGAGAGAACAGTTTTCTTAAATATTAAAATATTTAGAATTTTTAGGGCAGTTTTAGTAAGTATGACTGTTCAAGTCTTACTTGCTATAATGTTTAAAGGTGCAATTTTATGCCATTATTGAAAAATTTGATTTTTAAAATCTATATACCATATTCTTAACATAAATTTTCAGTGAGGTGGTATTTATGCAGTATTTAACAGATCAATATGCTGCTAATAGAGTTTGGAGGTGGGTGTTCAGTTTACAGTGTATAAATTTAAAATATGCATCCCTTAACAACGCTTTGTGTTAGCATGCTGCAAATCAAAATGGCGCTTAATATTAAAACCTGGTGTAGGGAATTTTAATGAAAATCCTGTTCATAAATGTAATGCATATGATGTGTACTTTGAAGTTTTAGTTGCCCTAATTTAGTTTATATTCAGCTGTTCAGCATAATTAATGTGTAATTTTACTTCATGCTATATTGTGACTTTGTGTTTTAAGTAATATTCACCTTTCTGTTTTTGCACCAGATAAGAATCAGTTACTTGAAAATAAATTTTTTATCTTTCTTAACTTCAGAATATTAAATTTGGAAAATCTACTAAACTTGTGTGTTATGTGGCTGTAAATGATGTACACGCTGTAAAATAAGATTGTTACTGTTATGTGGACTTATTATTTCTAAATGTTACTCATTGAAATGAGCATACAATAAAAAGCATTTATTGCACTTCAAAGTTTTATACGTTTATTTAAAGTTCTGTTATAATTTTCATTCTGTATTAAAGACTTTTCATTTAAAGTTTCTCTTAGGCAGTTCGATCATTAAAAAATATCTTGTTGAATTTTTGTGTTAATATGAGTTATGAATTTATGATTATGTCATGTTTATTCCTCAAAAATAGTCATCATTTGATAAAACCATGATGAAATGCTATAAATAAAGGTACTCATTTACTACTAGAAAGGAAACTAACAATTTTTAAACTATTTACATGAGTTCAGGGAAATGGACTATTTAGTTATATTCCCAATATACATTTCAAAAGTAAAATATTGACTTAATTATTTGGTAGTTGTTTCTGAAAATAAACATAAAATCAGTTGCTTTTTCCAATATCACCAGTAGTTAAAATTTTGCCAATTGAATGATTACTCTTTAAAGCCCATTAGCAGCAGAAGAAATCTCTTACCTTCATGTGTTAGACCAATGGTCCACAAATTATAAGGTTCACCTAGAGATCTTACTAATTTGAATTCAGTGTAGTGAGTACAATTTTACATTTCTAGCAAGTTCCATGTTGTCGTGCTTTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022391:ENSRNOT00000046364:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=NA C2=0.117
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=PD(13.2=93.9)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=5.9),PF139091=zf-H2C2_5=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGGAGAAACAAGGCAGTG
R:
TGCACTTGTGCATCTTCGGTT
Band lengths:
356-1029
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]