BtaINT0166015 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002668 | ZNF711
Description
zinc finger protein 711 [Source:HGNC Symbol;Acc:HGNC:13128]
Coordinates
chrX:74973931-74975818:-
Coord C1 exon
chrX:74975675-74975818
Coord A exon
chrX:74975109-74975674
Coord C2 exon
chrX:74973931-74975108
Length
566 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
ATTTTTTTTTTTTAATATAGCTG
3' ss Score
7.47
Exon sequences
Seq C1 exon
GAAATACTTTAGACTCAACATTAGAAAACAGAAGTAGTACAGCAGCACAGTACCTTCAAATTTGTGATAGCATCAATACAAATAAAGTACTTAAACAAAAAACCAAGAAGAGGAGAAGGGGAGAAACGAGGCAGTGGCAAACAG
Seq A exon
GTAAAATACTAATACATTGCTTTACGAATATTATAATTACTTGAAATGCAGTAGTATTTTTTGTAACCCAAGAATATAAGTCAGTTGTTTGTAGTGTAGTTAGTCCTACTTTCATATACTTGTGTTTGATCTAAGTATATGGGTTTTTTAAAAAATGTTTTACTGTTACTTAACTGTGCTTGTTTGCTTTTTACCCAGATGATGTTTTTCAAAAGAGAATTTTCAGGTTGTTACAAAGTGCATGTGATATAGCATTTTGGCAGATGAATGGTCTATAGTAGAGTGCTGCTCGTTATATTTTAGTGTGCTCAGTTCATTTGCTCAGTCACGTCTGACTTTGCGACACCATGGACTGCAGCACACCAGGCTTCCCTGTCCATCACTAACTCCTGGAGCTTTACTTTATTATACATTGCTTTTAATCAACATCTTGTCTTACAGGATTTTATTCCACTAGTATAGTTCTCACATTGTGAATGTCAGCTAATTTTGCTGCATTTGTTGTAAAACCCTTTTAAAACAGTCTGGCCAAATGTTACAACTTCTATTTTTTTTTTTTAATATAG
Seq C2 exon
CTGTTATAATAGGCCCTGATGGACAACCCCTGACAGTGTATCCTTGCCATATTTGCACAAAAAAGTTTAAATCCCGAGGATTCTTGAAAAGACACATGAAGAATCATCCTGATCATTTGATGAGAAAAAAATATCAGTGTACAGATTGTGACTTTACAACTAACAAGAAAGTGAGTTTCCATAACCATTTAGAAAGCCATAAGCTTATAAACAAAGTTGACAAAACCCATGAATTTACAGAATACACACGAAGATACAGAGAAGCAAGTCCACTGAGTTCAAATAAACTTATATTAAGAGACAAGGAGCCGAAGATGCACAAGTGCAAATACTGTGACTATGAAACTGCGGAACAAGGACTGTTAAACCGACATTTACTGGCTGTTCACAGCAAGAATTTTCCTCATGTTTGTGTTGAGTGTGGGAAGGGCTTTCGACATCCTTCTGAACTCAAGAAACATATGAGAACCCATACCGGTGAGAAGCCATATCAGTGTCAGTATTGTGTCTTCAGGTGTGCAGATCAATCAAATTTGAAAACTCACATTAAGTCTAAGCATGGTAACAATTTACCATATAAATGTGAGCATTGTCCCCAAGCATTTGGTGATGAGAGAGAACTTCAACGCCATCTGGATTTGTTTCAAGGACATAAGACACACCAGTGTCCTCATTGTGACCATAAGAGCACCAACTCAAGTGACCTTAAGCGGCACATTATATCTGTCCACACTAAGGATTTTCCTCACAAATGTGAGGTCTGTGATAAAGGTTTCCATCGCCCTTCTGAGCTCAAAAAGCATAGTGATATCCATAAGGGTAGGAAGATTCATCAGTGTAGGCACTGTGACTTTAAAACATCAGATCCATTTATTCTTAGTGGTCATATCCTTTCAGTTCATACTAAGGATCAGTCATTGAAGTGTAAAAGGTGCAAAAGAGGGTTCAGACAACAAAATGAGCTCAAAAAGCATATGAAGACACACAGTGGAAGGAAGATTTACCAATGTGAGTATTGTGAATACAGCACCACAGATGCATCTGGCTTTAAACGACATGTGATATCAATACATACAAAAGACTATCCACACAGGTGTGAATTCTGCAAGAAGGGATTCCGACGACCATCAGAAAAAAATCAGCATATTATGAGGCACCACAAGGAGGCTCTTATATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002668:ENSBTAT00000031586:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.130
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=PD(15.1=93.9)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=5.9),PF139091=zf-H2C2_5=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAAGGGGAGAAACGAGG
R:
CTTGTGCATCTTCGGCTCCTT
Band lengths:
357-923
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]