HsaINT0188220 @ hg19
Intron Retention
Gene
ENSG00000147180 | ZNF711
Description
zinc finger protein 711 [Source:HGNC Symbol;Acc:13128]
Coordinates
chrX:84525009-84528368:+
Coord C1 exon
chrX:84525009-84525152
Coord A exon
chrX:84525153-84525656
Coord C2 exon
chrX:84525657-84528368
Length
504 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TTTCTCTTTTCTTTATCTAGCTG
3' ss Score
9.87
Exon sequences
Seq C1 exon
GAAATACTTTGGACTCAGCATTAGAAAGCAGAAGTAGTACAGCAGCACAGTACCTTCAAATTTGTGACGGCATTAATACAAATAAAGTACTTAAACAAAAAGCCAAAAAGAGGAGAAGGGGAGAAACCAGGCAGTGGCAAACAG
Seq A exon
GTAAATACTTTGCTTTATGAATATTATAATTATTTGAGATGTGGAAGTATTTTTTGTCACCAAAGAAAAATATCGATGGTTTACTTGGCAGTTCTACTCTCCATGTACCTGTTTGTGTATGCTATAGATAATTGTTTTTTTTTTTTTTTACTTTGTGTGACTGGTACTTAATAAAACTATGCTTGTTTGCTCTTTATTCCAAAGATACTTTTACAGAGAATTTTCAGGTTGGTTTAACAATAAAGGGTACCTGTTTTTGGTATTCAAAGTATATATGATATTGCATTTTGGCATGTGAGTGGTTCATAGTAGAGTGCTGCTCATTACTTTTTAGTGAGCTACTTTGCCATAAATTGCTTTTATTATGTATTTTTTATATTACAGGATTTCATTCAACTAGTATTGTTTTCACATAGTGAATGCCAACTAGTTTTGGCACCTTTGTTATAAAATCCTTTAAAACAGTCTGACCAAATGTCACAACTTTCTCTTTTCTTTATCTAG
Seq C2 exon
CTGTTATAATAGGTCCTGATGGACAGCCCCTCACAGTGTACCCTTGCCATATTTGCACAAAAAAGTTTAAATCCAGGGGATTCTTAAAAAGACACATGAAGAATCATCCTGATCATTTAATGAGAAAAAAATATCAGTGTACAGATTGTGACTTTACAACTAACAAGAAAGTGAGTTTCCATAACCACTTAGAAAGCCATAAGCTCATAAACAAAGTCGACAAAACCCATGAATTTACAGAATACACACGAAGATACAGAGAGGCTAGTCCACTGAGTTCCAATAAACTTATTTTAAGAGACAAGGAGCCGAAGATGCACAAGTGCAAATACTGTGACTATGAAACTGCAGAACAAGGACTGTTAAACAGGCATTTGTTGGCCGTTCACAGCAAGAATTTTCCTCATGTTTGTGTTGAGTGTGGGAAGGGTTTTCGACATCCTTCTGAACTCAAGAAACATATGAGAACCCATACTGGTGAGAAGCCATATCAGTGTCAGTATTGTATTTTCAGGTGTGCAGATCAATCAAATCTGAAAACTCACATTAAGTCTAAACATGGTAACAATTTGCCATATAAATGTGAGCATTGTCCCCAAGCATTTGGTGATGAGAGGGAGCTTCAACGCCATCTGGATTTGTTTCAAGGACATAAGACACACCAGTGTCCTCATTGTGACCATAAGAGCACCAATTCAAGTGACCTTAAGCGGCACATCATATCTGTCCATACTAAGGATTTTCCTCACAAATGTGAGGTCTGTGATAAAGGTTTTCATCGTCCTTCTGAGCTCAAAAAGCATAGTGATATCCATAAGGGTAGGAAGATTCATCAGTGCAGGCACTGTGACTTTAAAACATCCGATCCATTTATTCTTAGTGGCCATATCCTTTCAGTTCATACTAAAGATCAGCCATTGAAATGTAAAAGGTGCAAGAGAGGATTCAGACAACAAAATGAGCTAAAAAAACATATGAAGACCCATACTGGAAGGAAGATTTACCAATGTGAGTATTGTGAATACAGCACTACAGATGCATCTGGCTTTAAACGACATGTGATATCAATACATACAAAAGACTATCCACACAGGTGTGAATTCTGCAAGAAGGGATTCCGAAGACCATCAGAAAAAAATCAGCATATTATGAGGCACCACAAAGAGGCTCTTATGTAATAAGATCAATATAAAGAAAGAAGCTATTTAGGAGATATGATATGCTACTTGGGAGAAAACTCTCACTAACTGTCTCACCGGGTTTCAAAGCTTGATACTAAACCATGACTTTACATTCTTTGTATTAAAGATCTTAAAATATTTGAATTCACAGGGGATCCCATAGCCCTTTGAAAATTACTTAAAGAATTTAAGAAGCACTATAGAATGGTTACAGAAAAACTTCTTAAGTATCTGTGTAATAGTATTATATGCATACTTAAACTACAGAGGGGAAAAGCAAAGACAAATACTTTATTTGGCTGATTATGTTAGATACAAATGTTTCTGAGAAGAGAATACATAATTGAGTTTAGTGATGCTTTGCTATAGCAAGCAAACCCACTTTTATGCAATTTTAGAAATGGGGCAGGGAAACAAAATGTGGTCATTCATCAGTCACTTAGTCATTGAGCCTTTTATATTGTACCTGGAAATTAAATTCCAGCAATGACAAAAGTTTTGTGTATTCATTAAAAGAAAACTAACTGGAAAACAGGTTAGATTAATTCAGTACTATTAAAAAAGAATTCAGAGCTGTTAATATTTTATCACAGGATAGGATACTTAAAATATAGCATTCTGTGCTGAGATCTAAGGTGAAGTCTATAAAGATTAAAGTTCCCTTTTTTCTGATGTTCAAGTTGATTGTTGTTCAGTATGGCATATATGACAAAAGTATATTTGAGTCAAATGTGGCTTTCTAAAATGGATGCAACATTAGCGTTGCAAACAAAATCAGCACTATATTTCTTAATGATCTAAAGATTAATTTGAGAGAACACAGTTTTCTTAAATATTATAATGTCTAGAGTTTTTTTAGGACAGTCTTAGCAAGTATGATTGTTCTAGTCTTACTTGCTCTAATGTTTAAAGGTGCAATTTTATGCCATTATTGAAATTGATTTTTAAAATCTATATACCATATGATTAACATGCATTTTCAATATGAGGCAGTGTTTATGCAGTATTTAACAGAGCAATCTGCTGCCAATAGAGTTTGGAGGTGGATATTTAGTTTACAGTGTATAAACTTAAAATATGCATCCCTTTAACAACGCTTTGTGTTAGCATGCTGCAAATCAAAATGGCACTTAATATTAAAAGCTGGTTTAGGGAAATTTTATGAAAATCCTGTTCATAAATGTAATGCATATGATATGTACTTTTAAGTTTTAGTTGCTTCATGTTTACATTCAGCTGTTCAACATAATTAAAATGTAATTTTACTTCATGCTATATTGTGGCTTTGTGTTTCAAATAATGTTCACCTTTCTGTTTTTGCACCAGATAAGAATCAGTTCCTTGAGAATAAATTTTTTATCTTTCTTAACTTCAGAATATTAAATTTGGAATATCTACTAAAATTGTGTGTTATGTGGCTGTAAATGATGTACACGCTGTAAAATAAGATCGCTACTGTTATGTGGGATTATTATTTCTAAATGTTACTCATTGAAATGAGCATACAATAAAAAGCATTTATTGCACTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147180-ZNF711:NM_021998:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.342 A=NA C2=0.122
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=PD(15.1=93.9)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=5.9),PF139091=zf-H2C2_5=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAAGGGGAGAAACCAGG
R:
CTTGTGCATCTTCGGCTCCTT
Band lengths:
357-861
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)