Special

MmuINT0179782 @ mm9

Intron Retention

Gene
ENSMUSG00000025529 | Zfp711
Description
zinc finger protein 711 [Source:MGI Symbol;Acc:MGI:3045342]
Coordinates
chrX:109745435-109748671:+
Coord C1 exon
chrX:109745435-109745578
Coord A exon
chrX:109745579-109745987
Coord C2 exon
chrX:109745988-109748671
Length
409 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTCCTTTTTCCCCCTTTCAGCTG
3' ss Score
12.2
Exon sequences
Seq C1 exon
GAAACACTTTTGACTCAGCATTAGAAAACAGAAACACTACAGCAGCACAGTACCTTCAAATTTGTGATAGCATGAACACAAATAAAGTTCTTAAACAAAAAATCAAGAAGAGGAGAAGGGGAGAAACAAGGCAGTGGCAAACAG
Seq A exon
GTAAGATATTTATGTTTTATGAGAACATCAAGTATTTTTTAATAACTAAGCTATATCTCCATCCCTGATAATTATATTTTAACAGTATATGATTGATGCTTTAAAAAGGCATATTGTCTCCTTATTCAAAAGATATTTTAAAGACAATCTTCAGATGGGTTTAATTATAAAGATACTTGATTCTTTTTTTATATTTCATGCCATAGATGAGTAGTCTAAAGGAGAGAGCCACTTATTCAGTAAACAACTTTAGTACAAATATTTTATAGTATGCATTTTTATTATATAAGGCTTTTATTCAACTAGTATTTTAACATAGTAAATTTTAGTTATTTTCAGGGTATTGTTTTTAAAGACTGTTTTAAAGAAGTGTTATCAAATGTTACAATTTCCTTTTTCCCCCTTTCAG
Seq C2 exon
CTGTTATAATAGGTCCTGATGGACAGCCCTTGACAGTATACCCTTGCCATATTTGCACAAAAAAGTTTAAATCCAGGGGATTCTTAAAAAGACACATGAAGAATCATCCCGATCATTTGATGAGAAAGAAGTACCAGTGTACAGATTGTGATTTCACAACTAACAAGAAAGTGAGTTTCCATAACCACTTAGAAAGCCATAAGCTCATAAACAAGGTTGATAAAACCCATGAATTTACAGAATACACTCGAAGATACAGAGAAGCTAGTCCACTGAGTTCAAATAAACTCATTTTAAGAGACAAGGAACCGAAGATGCACAAGTGCAAGTACTGTGATTACGAAACTGCCGAACAAGGACTGTTAAATAGACATTTGCTGGCTGTTCATAGCAAGAGTTTTCCTCATGTTTGTGTTGAGTGTGGGAAGGGTTTTCGTCATCCTTCTGAACTCAAGAAACATATGAGAACCCATACTGGTGAGAAGCCATATCAGTGTCAGTACTGTGCATTCAGATGTGCAGATCAATCAAACCTGAAAACGCACATTAAGTCTAAGCATGGTAGCAACTTGCCCTATAAATGTGAGCATTGTCCTCAAGCCTTTGGTGATGAGAGAGAGCTTCAGCGCCATCTGGATTTGTTTCAAGGACATAAAACACACCAATGTCCTCATTGTGATCATAAGAGCACCAACTCAAGTGACCTTAAGCGGCACATCATATCTGTCCATACCAAGGACTTTCCTCACAAATGTGAAGTCTGTGATAAAGGTTTTCATCGTCCTTCAGAGCTTAAAAAACATAGTGATATTCATAAGGGTAGGAAGATTCACCAGTGTAGGCATTGTGACTTTAAAACCTCAGATCCATTTATTCTTAGTGGTCATATCCTTTCAGTTCATACTAAAGATCAGTCATTGAAGTGTAAAAGGTGCAAGAGAGGATTCAGACAACAGAATGAGCTGAAAAAGCACATGAAGACTCATACTGGAAGGAAGATTTACCAATGTGAATATTGTGAATACAGCACCACAGATGCATCTGGATTCAAACGACATGTGATTTCAATACATACGAAAGACTATCCACACAGGTGTGAATTCTGCAAAAAGGGATTCCGAAGACCATCAGAAAAAAAGCAGCATATAATGAGGCACCACAAGGAGACTCTTATGTAGTAAGATCGAAATAAGGAAAGATGTCATTTACAAAATAAAATATACTATTTGGGAGGAAAATCTCACTGTTTGATCTGGTTTCAAAGCTTGATATTAAATCATAAATTTACATTCTTTGTATTAAAGATCTTGAAATATTTGGACTAGAAAGGCAGTCTCATAGCCCTTTGAAAATTATCTAAAGAATTTAAGGAGTACCATAGGACGGTTGCAGAGGAACTTAACTGTCATTAACAGTATTATATGCATAACTAAACTACAGAGGGGGAAAGTTAAGACACCTTATTTGATTGGTTACACTAGAGATAAGTGTTTCTGGAAGGAGAATACATAATTGATTTAGAAATGCTTTGCTGTAGCAAGCAGCCTCACTTTTATGCAATTTTAGAAATAGGGTGGGGAAAGAAAATGCAGTCATCCATCAGTCACTTAGTCATTGAACCTTTTATATTGTACCTGGACATTGGATTCCAGAAACAGCAAATGTTTTGTGTATTTGTTACAAGGAATCTCACTCTGGTAAAACAAGTTACATTGATTCAGTCCTAGTTTTAAAAAGGCAGAACTTCAGAGTTGTTGATATTTTATCACAGGACATGAAGTTTAAGACATAGCATTCTGTGCTGAAACCTGAAGGGAAATATAAGAAATAAAGAGTTCCAGTTTTGATGTTCAAGTAGATTCAGTATGGCATATATGATAAAAGTGTTTGAGTCAAATGTGGCTTTCTAAAATGGATGCAAGTATGTTAAAAAGTCAACACTATGTTTCTTATAATCTGAATGTTAAATTGAGAGAACAGTTTTCTTAAATATGAAAATATTTAGAATTTTTAGGGCATTTTTAGTAAGTATGACTCTTCAAGTCTTACTTGCTCTAATGTTTAAAGGTGCAATTTTATGCCATTATTGAAAATTTTGATTTTTAAAATCTATATACCATATTCTTAACATAAATTTTCAATGAGGTGGTATTTATGCAGTATTTAACAGAACAATATGCTGCCAATAGAGTTTGGAGGTGGGTATTCAGTTTACAGTGTATAAATTTAAAATATGCATCCCTTAACAACGCTTTGTGTTAGCATGCTGCAAATCAAAATGGCGCTTAATATTAAAACCTGGTGTAGGGAATTTTAATGAAAATCCTGTTCATAAATGTAATGCATATGATGTGTACTTTTAAGTTCTAGTCCCCAAATTTAGTTTATATTCAGCTGTTCAGCATAACTAATGTGTAATTTTCCTTCACGCTATATTGTGGCTTTGTGTTTTAAGTAATATTCTCCTTTCTGTTTTTGCACCAGATAAGAATCTGTTACTTGAAAACAAATTTTTTTATCTTTCTTAACTTCAGAATACTAAATTTGGAAAATCTACTAAACTTGTGTGTTATGTGGCTGTAAATGATGTACACGCTGTAAAATAAGATTGTTACTGTTACGTGGACTTATTATTTCTAAATGTTACTCATTGAAATGAGCATACAATAAAAAGCATTTATTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025529-Zfp711:NM_177747:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.414 A=NA C2=0.128
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF047048=Zfx_Zfy_act=PD(15.1=93.9)

							
A:
NA

							
C2:
PF0009621=zf-C2H2=WD(100=5.9),PF139091=zf-H2C2_5=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.9)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000109036





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000071717, ENSMUSP00000118117
  



Associated events






Conservation


Human
(hg38)
chrX:85270147-85270650 
ALTERNATIVE
HsaINT0188220
(ZNF711)
Human
(hg19)
chrX:84525153-84525656 
ALTERNATIVE
HsaINT0188220
(ZNF711)
Rat
(rn6)
chrX:84092677-84093349 
LOW PSI
RnoINT0168626
(Zfp711)
Cow
(bosTau6)
chrX:74975109-74975674 
ALTERNATIVE
BtaINT0166015
(ZNF711)
Chicken
(galGal4)
chr4:8661311-8661768 
HIGH PSI
GgaINT0070520
(ZNF6)
Chicken
(galGal3)
chr4:8746179-8746642 
ALTERNATIVE
GgaINT0070520
(ZNF711)
Zebrafish
(danRer10)
chr14:11673581-11676115 
LOW PSI
DreINT0181638
(znf711)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GGAGAAACAAGGCAGTGGCAA

				
R: 
TGCACTTGTGCATCTTCGGTT

				
Band lengths: 
352-761

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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